Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2316441	2316628	188	171 [0]	[0] 44	ompC/rcsD	outer membrane porin protein C/phosphotransfer intermediate protein in two‑component regulatory system with RcsBC

ATTATTTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAT  >  W3110S.gb/2316629‑2316689 |                                                             attattTTTGTTTGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:1485611/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:64347/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:422242/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:465673/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:54275/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:55950/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:562682/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:595852/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:597873/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:616377/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:629458/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:419336/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:663241/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:676478/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:704805/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:714301/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:737633/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:745878/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:775633/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:83425/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:838678/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:940696/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:12854/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:1023997/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:1083502/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:1085019/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:1086609/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:1152948/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:1177561/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:1187475/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:1213639/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:1222612/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:1016590/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:1342089/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:1426954/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:1441577/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:152765/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:1536156/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:16349/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:172038/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:222741/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:257747/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt  <  1:410742/61‑1 (MQ=255) attattTTTGTTGGGCTTTTTGTAGGTTATTTATACAGCAAAATGGCGCTTGTACATCTAt  <  1:81954/61‑1 (MQ=255) |                                                             ATTATTTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAT  >  W3110S.gb/2316629‑2316689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑