Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2505015	2505136	122	44 [0]	[0] 63	ypdA	predicted sensory kinase in two‑component system with YpdB

TCCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCAGAG  >  W3110S.gb/2505137‑2505196 |                                                            tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:598444/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1595030/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:195685/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:216009/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:226441/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:232542/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:249474/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:263377/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:282499/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:310466/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:361684/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:373601/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:380947/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:39335/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:417234/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:440291/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1552660/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:602898/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:636262/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:751126/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:771769/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:804021/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:815905/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:861202/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:886130/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:892500/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:929874/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:936310/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:938899/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:940033/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:942103/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:982301/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1313865/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1008498/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1011245/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1031801/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1056789/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1091306/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1096183/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1111417/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1123091/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1141179/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1208231/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1223090/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1256239/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1276938/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1307120/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:131031/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1001299/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1325011/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1333657/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1340829/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1373113/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:138273/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1393834/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1422864/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:144645/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1462658/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1468202/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1489665/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:150868/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCagag  <  1:1523873/60‑1 (MQ=255) tcCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGAagag  <  1:1531204/60‑1 (MQ=255) |                                                            TCCACGCAACTGGAGGTTTCACGCGCCGAGCAGCTACGTGAAATGGCAAATAAGGCAGAG  >  W3110S.gb/2505137‑2505196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑