Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2594910	2594943	34	66 [1]	[0] 28	ypfJ	conserved hypothetical protein

TTTCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACG  >  W3110S.gb/2594944‑2595005 |                                                              tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:175540/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:912310/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:876906/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:833846/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:831795/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:814280/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:770990/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:562074/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:510051/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:464320/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:393917/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:364395/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:273058/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:215339/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:1045353/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:1542962/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:1536773/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:1530784/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:1447643/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:1442386/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:1406300/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:1388926/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:1384966/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:1300522/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:118857/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:113077/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:1106454/62‑1 (MQ=255) tttCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACg  <  1:1096778/62‑1 (MQ=255) |                                                              TTTCATGTCATCATAGAAGGAGAGATCGATATAAACCGTGCCATCCGCCGGGCAATAGAACG  >  W3110S.gb/2594944‑2595005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑