Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3106900	3108596	1697	142 [0]	[0] 55	[speC]–[yqgA]	[speC],[yqgA]

GCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGCC  >  W3110S.gb/3108597‑3108658 |                                                              gCGATCCGAGTATTTTAATCGCGAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:843234/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTc     >  1:1014498/1‑59 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTTGcc  >  1:1607477/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCg    >  1:1242949/1‑60 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:267390/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:1051836/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:353981/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:363484/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:452452/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:471067/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:490271/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:505874/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:517211/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:526793/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:544430/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:567745/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:570623/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:580533/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:725288/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:729020/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:753399/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:794242/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:850624/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:855620/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:903448/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:929085/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:94206/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:1218780/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:1295567/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:1413197/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:1443378/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:1261474/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:125275/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:1446943/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:1459410/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:1464312/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:1501593/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:1512713/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:1544823/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:166039/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:172063/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:178445/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:1058119/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:20455/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:211282/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGcc  >  1:226305/1‑62 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGc   >  1:943351/1‑61 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGc   >  1:1363809/1‑61 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGc   >  1:137829/1‑61 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGc   >  1:615136/1‑61 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGc   >  1:612827/1‑61 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGc   >  1:1507072/1‑61 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGc   >  1:365167/1‑61 (MQ=255) gCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTCATTTCTTTAc                  >  1:351186/1‑46 (MQ=255) gCGATCCGACTATTTTAATCGCCAAGTCATTTCTTGAtt                         >  1:1235737/1‑39 (MQ=255) |                                                              GCGATCCGAGTATTTTAATCGCCAAGTCATTTCTTGATTTCTTTACGGCGATGATCTTCGCC  >  W3110S.gb/3108597‑3108658

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑