Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3139929	3140060	132	74 [0]	[0] 32	[hybD]–[hybC]	[hybD],[hybC]

CGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTACGC  >  W3110S.gb/3140061‑3140122 |                                                              cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:16971/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:850937/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:698213/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:648364/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:632905/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:629924/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:613548/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:60146/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:54402/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:507400/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:4886/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:433838/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:39768/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:358926/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:336438/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:247666/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:1079607/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:1613061/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:1573945/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:1561482/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:1538440/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:1462462/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:138237/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:135271/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:1312420/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:1306539/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:126174/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:1235356/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:1210795/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:1205558/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:1151891/62‑1 (MQ=255) cGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTAcgc  <  1:109844/62‑1 (MQ=255) |                                                              CGGCAACCGGTGTACCCACCAGCGACTGCTCGTAAGGACCGACGTCATCATTGAAGTTACGC  >  W3110S.gb/3140061‑3140122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑