| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 554,190 | 0 | A | C | 70.4% | 450.2 / 194.2 | 284 | A119A (GCA→GCC) | cysS | cysteinyl‑tRNA synthetase |
| Reads supporting (aligned to +/- strand): ref base A (0/84); new base C (0/200); total (0/284) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.44e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 284 total aligned reads displayed.
CGCCCGGATATGGAGCCGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAGG > W3110S.gb/554152‑554228 | cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCTAAATTATTGAACTCACTGaac < 1:1289829/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:31869/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:516311/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:508670/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:50392/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:479719/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:435644/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:431089/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:394626/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:348354/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:334760/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:545014/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:250077/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1001711/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:21993/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:209372/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1625315/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1611267/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1585910/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1577527/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1567654/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:778152/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:987230/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:976680/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:960260/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:944089/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:919948/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:881778/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:831372/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:817951/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:805300/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:798078/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:23261/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:752475/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:735761/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:727072/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:717822/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:685551/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:644397/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:625535/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:620956/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:559921/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1555981/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1007274/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1030916/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1046137/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1061167/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1070737/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1086520/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1135750/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1148774/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:122207/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1287283/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:129524/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1339692/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1380293/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1408352/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:149151/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1444270/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1430103/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1530062/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:152398/61‑1 (MQ=255)cgcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1437578/61‑1 (MQ=255) gcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1228167/60‑1 (MQ=255) gcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1275742/60‑1 (MQ=255) gcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:826538/60‑1 (MQ=255) gcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1420605/60‑1 (MQ=255) gcCCGGATATGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1564393/60‑1 (MQ=255) tatGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:273027/53‑1 (MQ=255) tGGAGCCGCGCGCGACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1538644/51‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:116423/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:117632/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:382975/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:761896/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:118646/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:1448701/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:1118644/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:1095552/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:869976/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:919016/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:1015355/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:1312239/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:362454/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:1393730/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:466725/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:1341354/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:537538/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:59958/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:125320/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:635457/62‑1 (MQ=255) ccGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGAGCGCCAAAgg < 1:935653/62‑1 (MQ=255) ccGCGCGCGACGCAACATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:1543621/62‑1 (MQ=255) gcgcgcgACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:650021/60‑1 (MQ=255) cgACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:458385/55‑1 (MQ=255) gACGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:121676/38‑1 (MQ=255) cGCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:311532/36‑1 (MQ=255) cGCACATTATCGCCGAAATTATTGAACTCACTGaac < 1:1193111/36‑1 (MQ=25) gCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:496955/35‑1 (MQ=255) gCACCATATCGCCGAAATTATTGAACTCACTGaac < 1:1644524/35‑1 (MQ=255) cACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAgg < 1:581489/50‑1 (MQ=255) | CGCCCGGATATGGAGCCGCGCGCGACGCACCATATCGCAGAAATTATTGAACTCACTGAACAACTGATCGCCAAAGG > W3110S.gb/554152‑554228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |