| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 4,413,207 | C→T | D624D (GAC→GAT) | rnr → | exoribonuclease R, RNase R |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 4,413,207 | 0 | C | T | 99.4% | 490.1 / ‑5.7 | 172 | D624D (GAC→GAT) | rnr | exoribonuclease R, RNase R |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (171/0); total (172/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Only 100 of 172 total aligned reads displayed.
CGTCGTGCCGACGAAGCAACGCGCGATGTGGCTGACTGGCTGAAGTGTGACTTCATGCTCG > W3110S.gb/4413196‑4413256 | cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGa > 1:165659/1‑43 (MQ=38)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAGGTGTGACTTCATGCTCg > 1:1515087/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTTACTTCATGCTCg > 1:990497/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTTACTTCATGCTCg > 1:1135234/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGAc > 1:234447/1‑51 (MQ=39)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCAt > 1:320514/1‑56 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTc > 1:145189/1‑60 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTc > 1:1625499/1‑60 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTc > 1:672216/1‑60 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:503242/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:923827/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:581289/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:556326/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:538240/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:531018/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:524594/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:519835/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:928649/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:519767/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:293424/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:492528/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:491942/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:971897/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:48255/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:465883/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:423203/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:40672/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:369876/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:333636/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:331448/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:906279/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:760279/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:896838/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:892940/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:883238/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:911912/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:846317/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:83311/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:82993/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:811801/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:780809/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:779198/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:594844/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:750618/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:744701/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:687117/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:669372/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:662136/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:641913/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:637973/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:629950/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:61944/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:596916/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1174114/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:305880/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1379881/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1377827/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1367615/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1348203/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1306091/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1274181/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:125706/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1245406/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:121448/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1197578/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1392697/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1160972/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:113952/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1117922/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1096489/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1084752/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1067625/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1063809/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1049010/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1021156/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1014743/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:171709/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1000113/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:281237/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:272472/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:268468/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:263387/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:24494/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:195319/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:179364/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:172630/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1395622/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1603606/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1583568/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1577562/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1554948/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:152223/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1519518/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1469239/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1435694/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1413058/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTCCATGCTCg > 1:1190474/1‑61 (MQ=255)cgtcgtGCCGATGAAGCAACGCGCGATGCGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:438588/1‑61 (MQ=255)cgtcgtGCCGACGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:604735/1‑61 (MQ=255)cgtcgtACCGATGAAGCAACGCGCGATGTGTCTGACTGGCTGAAGTGTGACTTCATGCTCg > 1:1049250/1‑61 (MQ=255) | CGTCGTGCCGACGAAGCAACGCGCGATGTGGCTGACTGGCTGAAGTGTGACTTCATGCTCG > W3110S.gb/4413196‑4413256 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |