| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 4,544,292 | C→G | intergenic (‑109/‑1347) | yjhA ← / → fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 4,544,292 | 0 | C | G | 97.6% | 235.6 / ‑2.7 | 84 | intergenic (‑109/‑1347) | yjhA/fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
| Reads supporting (aligned to +/- strand): ref base C (2/0); new base G (0/82); total (2/82) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.87e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.07e-01 | |||||||||||
ATTAGCATTTATGTTGTGTAATATTTTTTTGCCAGGCTTATAGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTG‑AAAAATCTCTTTTCA > W3110S.gb/4544236‑4544348 | aTTATCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:836796/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGTCTTATAGTGTCTTTGGCAACGGGTAGc < 1:833135/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:432287/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:619222/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:612744/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:605398/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:598059/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:582556/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:538768/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:482309/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:465517/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:636435/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:425326/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:421881/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:408133/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:374739/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:346379/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:334879/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:308582/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1033527/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:283740/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:83912/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:988452/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:983450/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:958525/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:95768/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:952138/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:936809/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:905753/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:886350/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:862146/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:635029/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:793116/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:782680/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:760870/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:758226/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:736346/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:653308/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:649690/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:302266/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1151749/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1388408/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:279011/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1328908/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1292154/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1257386/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:119588/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1188644/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1186958/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1179038/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1178306/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1373427/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1112944/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1096806/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1096745/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1094841/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1084919/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1079977/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1065949/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1054017/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1053483/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:201769/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1509060/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1513029/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1397908/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1578052/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1588740/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1597287/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:163031/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1641703/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1645204/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:193513/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:19274/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:226631/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGCTAGc < 1:1439297/62‑1 (MQ=255)aTTAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGGCTTTGGCAACGGGTAGc < 1:173243/62‑1 (MQ=255)aTTAGCATTTATGTTGAGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:260606/62‑1 (MQ=255)aTTAGCATCTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:887989/62‑1 (MQ=255) ttAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:323315/61‑1 (MQ=255) tAGCATTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:166079/60‑1 (MQ=255) aTTTATGTTGTGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:287014/56‑1 (MQ=255) tgttgtGTAATA‑TTTTTTGCCAGGCTTATAGTGTCTTTGGCAACGGGTAGc < 1:1548664/51‑1 (MQ=255) cAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAAAATCTCTTTTca > 1:900423/1‑62 (MQ=255) cAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAAAATCTCTTTTca > 1:847823/1‑62 (MQ=255) | ATTAGCATTTATGTTGTGTAATATTTTTTTGCCAGGCTTATAGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTG‑AAAAATCTCTTTTCA > W3110S.gb/4544236‑4544348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |