Predicted mutation
evidence seq id position mutation annotation gene description
RA W3110S.gb 986,889 G→A G172G (GGC→GGT ompF ← outer membrane porin 1a (Ia;b;F)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb986,8890GA99.6% 722.3 / NA 259G172G (GGC→GGTompFouter membrane porin 1a (Ia;b;F)
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base A (258/0);  minor base C (1/0);  total (259/0)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 259 total aligned reads displayed.

TTTTACCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTT  >  W3110S.gb/986858‑986918
                               |                             
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAaagaa           >  1:414678/1‑52 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAaaga            >  1:535206/1‑51 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAaaga            >  1:271182/1‑51 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAaaga            >  1:200558/1‑51 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAATGAAGTTGGAGtt  >  1:813695/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTg       >  1:1377337/1‑56 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGTAGtt  >  1:986753/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:376114/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:586868/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:582779/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:575159/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:565572/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:557987/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:548122/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1017982/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:504118/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:468274/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:439536/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1022876/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:611166/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:371535/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:339705/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:326404/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:304662/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:293978/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1030041/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:256555/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:245152/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:239583/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1087652/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1006189/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:10016/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:92736/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:918055/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:894204/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:88553/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:870182/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:860176/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:832693/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:822011/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:819997/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:227961/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:783309/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:780982/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:765665/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:762269/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:753325/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:72920/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:689043/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:675329/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:652740/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:640839/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:123021/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1402942/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1073189/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:222341/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1348047/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1331864/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1299257/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1287344/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1278709/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1265742/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:125235/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1360019/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:119900/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1177559/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1172362/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1159350/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1148870/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1131403/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1124288/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1122645/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1096118/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1612102/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:208876/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1045897/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:188773/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:179740/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1641826/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1636869/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:162545/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:161518/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1416403/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1599314/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1529227/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:151133/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1486191/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1471183/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1470180/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1456806/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:1448163/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGt   >  1:1574097/1‑60 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGt   >  1:1210562/1‑60 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGt   >  1:1141359/1‑60 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGAACAAAGAAGTTGGAGtt  >  1:1121825/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACAATCAACCAGACCAaagaag          >  1:1163315/1‑53 (MQ=18)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACAATCAACCAGACCAAAGAAGTTGGAGtt  >  1:517919/1‑61 (MQ=255)
ttttACCCAGGTACTGAACAGCGAAGTTCAGACAATCAAACAGACCAaagaag          >  1:1305253/1‑53 (MQ=18)
ttttACCCAGGTACTGAACAGCAAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGAGtt  >  1:725888/1‑61 (MQ=255)
ttttACACAGGTACTGAACAGCGAAGTTCAGACCATCAACCAGACCAAAGAAGTTGGa     >  1:281151/1‑58 (MQ=18)
                               |                             
TTTTACCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTT  >  W3110S.gb/986858‑986918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: