New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 23679826 (0.780)4 (0.120) 4/98 NT 14.2% coding (732/732 nt) dnaQ DNA polymerase III epsilon subunit
?W3110S.gb 2855720 = 23 (0.700)intergenic (‑258/‑29) ygbA/mutS hypothetical protein/methyl‑directed mismatch repair protein

GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/236729‑236798
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTTTAATATCAGGGAACCGGACATAACC  >  W3110S.gb/2855720‑2855746
                                                                                                 
GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA                             <  1:2292076/70‑1
      AGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAA                        <  1:2820820/69‑1
                  CCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT                          >  1:2831745/1‑55
                     TCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACA       >  1:791875/1‑71
                         GATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATAT                     >  1:2937067/1‑53
                               GTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCGTAATTTAATATCAGTAAACCGGACATAACC  <  1:1471675/66‑1
                                   AGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAAC   <  1:957376/61‑1
                                   AGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAT                            >  1:1772304/1‑36
                                    GAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT                          <  1:1531835/37‑1
                                                                                                 
GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/236729‑236798
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTTTAATATCAGGGAACCGGACATAACC  >  W3110S.gb/2855720‑2855746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.