New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb 273327 =NA (NA)5 (0.160) 4/92 NT NA coding (1015/1017 nt) insH IS5 transposase and trans‑activator
?W3110S.gb 273345 = NA (NA)coding (997/1017 nt) insH IS5 transposase and trans‑activator

CTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/273399‑273327
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cactGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTT  >  W3110S.gb/273345‑273414
                                                                                                                                               
CTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCA                                                                          <  1:2074091/71‑1
CTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCA                                                                          >  1:2021341/1‑71
CTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCA                                                                          <  1:824484/71‑1
  GGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCAC                                                                         >  1:162781/1‑70
   GCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACT                                                                        >  1:1068296/1‑70
   GCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACT                                                                        <  1:1619116/70‑1
   GCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCAC                                                                         <  1:1264225/69‑1
      ATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACT                                                                        <  1:2755473/67‑1
         TTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCA                                                                          <  1:2769476/62‑1
          TATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCA                                                                          >  1:460883/1‑61
          TATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCA                                                                          >  1:3037581/1‑61
                CGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCA                                                                          >  1:1059994/1‑55
                CGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCA                                                                          >  1:2708273/1‑55
                 GCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCA                                                                          <  1:2965829/54‑1
                 GCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCA                                                                          >  1:3127276/1‑54
                 GCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCA                                                                          >  1:2515306/1‑54
                   TGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACT                                                                        >  1:11302/1‑54
                          CCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCA                                                                          >  1:2325517/1‑45
                          CCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTC                                                                           <  1:1078576/44‑1
                           CTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCAC                                                                         <  1:1857046/45‑1
                           CTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCA                                                                          >  1:2753934/1‑44
                                 CGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCA                                                                          >  1:507917/1‑38
                                  GGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCA                                                                          >  1:2064688/1‑37
                                   GGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACT                                                                        <  1:2531679/38‑1
                                    GCGGACCAAATGATACGTCAGTGGGAGAGATCTCA                                                                          >  1:2208659/1‑35
                                                    GTCAGTGGGAGAGATCTCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATC                      >  1:3097001/1‑71
                                                    GTCAGTGGGAGAGATCTCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATC                      >  1:3128097/1‑71
                                                     TCAGTGGGAGAGATCTCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACA                        <  1:2923502/68‑1
                                                         TGGGAGAGATCTCACTAACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAG                 >  1:729968/1‑71
                                                           GGAGAGATCTCACTGACGTATCATTTGGTCCGCCCGA                                                 <  1:2245144/37‑1
                                                                     CACTGAGGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCG       <  1:1710393/69‑1
                                                                     CACTGACGTATCATTTGGTCCGCCCGTAACTGGTTGGCCAGCGTGAATAACATCGCCAGTTGG             <  1:867385/63‑1
                                                                     CACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTA          <  1:1515702/66‑1
                                                                     CACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGT            <  1:1191869/64‑1
                                                                     CACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATA                           <  1:3137998/49‑1
                                                                     CACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAAT                            <  1:2634131/48‑1
                                                                      ACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGATTAACATCGCCAGTTGGTTATCGTTT    <  1:2692701/71‑1
                                                                      ACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTT    <  1:1296357/71‑1
                                                                      ACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTT    <  1:2691018/71‑1
                                                                      ACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTT    <  1:1651379/71‑1
                                                                      ACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGT            <  1:2985119/63‑1
                                                                      ACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCG                     <  1:687878/54‑1
                                                                      ACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCG                     <  1:2883590/54‑1
                                                                      ACTGACGTATCATTTGGTCCGCCCGAAACAGGTTG                                        <  1:199745/35‑1
                                                                       CTGACGTATCATTTGGTCCGCCCGAAACAGGTTGTCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTT   <  1:884255/71‑1
                                                                       CTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTT   <  1:1739062/71‑1
                                                                       CTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTT   <  1:2419914/71‑1
                                                                       CTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTT   >  1:1651930/1‑71
                                                                       CTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTT   <  1:448673/71‑1
                                                                       CTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTT   <  1:1857079/71‑1
                                                                       CTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTT   <  1:186152/71‑1
                                                                       CTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTT   >  1:1336232/1‑71
                                                                       CTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTT    <  1:2688912/70‑1
                                                                       CTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTT    >  1:3042495/1‑70
                                                                       CTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTTCGTTTTT  <  1:1961178/71‑1
                                                                       CTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCA                  <  1:388435/56‑1
                                                                       CTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAAC                         <  1:2271001/49‑1
                                                                       CTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAA                          <  1:1849371/48‑1
                                                                       CTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAA                          <  1:2411972/48‑1
                                                                       CTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTG                               <  1:923185/43‑1
                                                                        TGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTT  >  1:1072704/1‑71
                                                                        TGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTT   <  1:2715369/70‑1
                                                                        TGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTT   >  1:1061023/1‑70
                                                                        TGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGT      <  1:1823171/67‑1
                                                                        TGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTAT         >  1:2784743/1‑64
                                                                        TGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATC                      <  1:65575/51‑1
                                                                        TGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAAT                            >  1:1418065/1‑45
                                                                        TGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGA                              >  1:2510535/1‑43
                                                                        TGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTG                               <  1:2271986/42‑1
                                                                        TGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGT                                <  1:1554557/41‑1
                                                                                                                                               
CTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/273399‑273327
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cactGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTT  >  W3110S.gb/273345‑273414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.