| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 713954 | 56 (1.680) | 24 (0.720) | 20/100 | NT | 34.0% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | W3110S.gb | 2809398 = | 37 (1.110) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/713886‑713954‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTT > W3110S.gb/2809398‑2809467 ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACG > 1:179795/1‑71ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAC < 1:1319259/70‑1 ACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTG > 1:3120262/1‑70 ATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAAT > 1:1310658/1‑70 CAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGA < 1:2217408/70‑1 AGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGG > 1:2519459/1‑71 GATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCT < 1:1231284/54‑1 TGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAA > 1:2590237/1‑56 TGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAA > 1:2325225/1‑56 TGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGCCTGAAA > 1:2922485/1‑56 ATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAA < 1:1729507/71‑1 TTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGG < 1:1455231/60‑1 CCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATG > 1:519339/1‑71 GGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTG > 1:1671555/1‑40 AATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTC > 1:1819447/1‑71 ATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCG > 1:192088/1‑71 GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT < 1:2546475/70‑1 GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGG < 1:1414742/60‑1 ATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTT < 1:1324312/70‑1 TGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACG > 1:469739/1‑71 GAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTT < 1:319864/65‑1 AGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTC > 1:2914944/1‑59 TTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGA < 1:999042/71‑1 TTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATA < 1:3060082/40‑1 TTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAA > 1:1841406/1‑71 ATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCG > 1:1626353/1‑46 ATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCG > 1:631278/1‑46 TCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAA < 1:1552029/70‑1 TAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAA > 1:2198396/1‑70 AACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTT > 1:1315920/1‑45 ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTT > 1:628005/1‑71 ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/713886‑713954‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTT > W3110S.gb/2809398‑2809467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |