| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 41 (1.250) | 33/98 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2172376‑2172308‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCCT < W3110S.gb/3920281‑3920212 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT < 1:899159/71‑1TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT < 1:138697/71‑1TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG < 1:2467316/70‑1 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGT > 1:2831096/1‑71 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTG > 1:2793348/1‑67 GAGTCACCTCTGACTGAGAGTTTACTCACTTAGCAGCGTGTCCACTATTGCTGGGTAAGATCAG > 1:574439/1‑64 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA > 1:2025689/1‑71 GTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA > 1:2727111/1‑70 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACAC < 1:3084433/70‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACAC < 1:1617123/70‑1 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTC > 1:2642587/1‑71 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTC > 1:1520800/1‑71 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA > 1:1501838/1‑63 ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGC < 1:1810995/71‑1 TGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTA > 1:317209/1‑71 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTA < 1:1615642/69‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCT < 1:192767/68‑1 AGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATC > 1:220463/1‑69 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC > 1:1848904/1‑71 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTC > 1:1025840/1‑47 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTC > 1:2730485/1‑47 CACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTAC > 1:700677/1‑47 ACTTAGCCGCGTGTGCACTATTGCTGGGTAAGATCAG > 1:1135053/1‑37 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGG > 1:1009233/1‑71 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGG < 1:327657/71‑1 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGG > 1:2404588/1‑71 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTC > 1:1746716/1‑42 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG > 1:2586374/1‑37 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGT > 1:1037454/1‑71 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG < 1:2708971/42‑1 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAG < 1:2532623/61‑1 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG < 1:1745551/41‑1 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG > 1:441239/1‑41 AGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTA > 1:2483001/1‑70 AGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTAT < 1:1454449/55‑1 GCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACA < 1:2828813/71‑1 GCGTGTCGACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACA < 1:1392466/68‑1 CGTGTGCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGAT < 1:3150993/60‑1 GTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCT > 1:1235072/1‑71 GTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCT < 1:3031534/47‑1 TGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCT < 1:812184/70‑1 CACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGA < 1:1593123/53‑1 CACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAG > 1:2314136/1‑48 CTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTC < 1:2356384/65‑1 TATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACG > 1:2988670/1‑70 ATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACG > 1:2248046/1‑69 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAG > 1:2689038/1‑70 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGATACAAATCTCTGGACGAAGGTCAG > 1:185070/1‑70 GTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGT < 1:1177142/45‑1 TAAGATCAGTGTTCCTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGA > 1:1299051/1‑69 AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGT < 1:2541080/71‑1 AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACG > 1:1171946/1‑37 AGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAA > 1:2269587/1‑64 GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCCT < 1:742387/70‑1 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2172376‑2172308‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCCT < W3110S.gb/3920281‑3920212 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |