| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3690778 = | NA (NA) | 4 (0.120) | 3/98 | NT | NA | noncoding (2202/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | W3110S.gb | 3690797 = | NA (NA) | noncoding (2183/2904 nt) | rrlC | 23S ribosomal RNA | |||||
TGAAGTGTGGACGCCAGTCTGCATGGAGCCGACCTTGAAATACCACCCTTTAATGTTTGATGTTCTAACGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3690848‑3690778‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCAAAGCCTCCCACCTATCCT > W3110S.gb/3690797‑3690866 TGAATTGTGGACGCCAGTCTGCATGGAGCCGACCTTGAAATACCACCCTTTAATGTTTGATGTTCTAACGT > 1:2191739/1‑71TGAAGTGTGGACGCCAGTCTGCATGGAGCCGACCTTGAAATACCACCCTTTAATGTTTGATGTTCTAACGT > 1:356913/1‑71TGAAGTGTGGACGCCAGTCTGCATGGAGCCGACCTTGAAATACCACCCTTTAATGTTTGATGTTCTAACGT > 1:158000/1‑71TGAAGTGTGGACGCCAGTCTGCATGGAGCCGACCTTGAAATACCACCCTTTAATGTTTGATGTTCTAACGT > 1:1773518/1‑71TGAAGTGTGGACGCCAGTCTGCATGGAGCCGACCTTGAAATACCACCCTTTAATGTTTGATGTTCTAACGT > 1:1915360/1‑71 GAAGTGTGGACGCCAGTCTGCATGGAGCCGACCTTGAAATACCACCCTTTAATGTTTGATGTTCTAACGTT > 1:2181508/1‑71 GAAGTGTGGACGCCAGTCTGCATGGAGCCGACCTTGAAATACCACCCTTTAATGTTTGATGTTCTAACGTT > 1:2990133/1‑71 AAGTGTGGACGCCAGTCTGCATGGAGCCGACCTTGAAATACCACCCTTTAATGTTTGATGTTCTAACGTT < 1:244304/70‑1 AAGTGTGGACGCCAGTCTGCATGGAGCCGACCTTGAAATACCACCCTTTAATGTTTGATGTTCTAACGTT > 1:2541460/1‑70 GACGCCAGTCTGCATGGAGCCGACCTTGAAATACCACCCTTTAATGTTTGATGTTCTAACGT > 1:1874038/1‑62 CAGTCTGCATGGAGCCGACCTTGAAATACCACCCTTTAATGTTTGATGTTCTAACGT < 1:2823275/57‑1 ATGGAGCCGACCTTGAAATACCACCCTTTAATGTTTGATGTTCTAACGTT > 1:1847498/1‑50 ACCTTGAAATACCACCCTTTAATGTTTGATGTTCTAACGTT < 1:182511/41‑1 CTTTAATGTTTGATGTTCTAACGTTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCAC < 1:2251894/70‑1 TAATGTTTGATGTTCTAACGTTAAAGGGTGGTATTTCAAGGTCGGCTCCATGC > 1:1124091/1‑53 TAATGTTTGATGTTCTAACGTTAAAGGGTGGTATTTCAAGGTCGGCTCCATGC > 1:1440876/1‑53 TGTTTGATGTTCTAACGTTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCA < 1:1980423/70‑1 TTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCAAAGCCTCCCACCTATCCT < 1:2910653/71‑1 TTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGA < 1:1952031/36‑1 TTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAG < 1:255680/35‑1 TTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAG < 1:3130340/35‑1 TGAAGTGTGGACGCCAGTCTGCATGGAGCCGACCTTGAAATACCACCCTTTAATGTTTGATGTTCTAACGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3690848‑3690778‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCAAAGCCTCCCACCTATCCT > W3110S.gb/3690797‑3690866 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |