Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC W3110S.gb 3,742,938 Δ1,336 bp 100% insDinsC insD, insC

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ W3110S.gb 3742938–3744266 3744273 8–1336 52 [0] [0] 52 insD–insC insD,insC

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 37429370 (0.000)40 (1.430) 29/84 NT 100% intergenic (‑123/+9) yieE/insD predicted phosphopantetheinyl transferase/IS2 element protein
?W3110S.gb 3744274 = 0 (0.000)intergenic (‑100/+21) insC/yidZ IS2 element protein/predicted DNA‑binding transcriptional regulator

ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3742861‑3742937
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACG  >  W3110S.gb/3744274‑3744343
                                                                                                                                                   
ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTG                                                                               >  1:2096598/1‑70
     CAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTG                                                                         >  1:1582700/1‑71
       GACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGG                                                                       <  1:2669869/71‑1
          TAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCG                                                                    >  1:2931086/1‑71
             AGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGT                                                                 >  1:1844075/1‑71
              GCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTT                                                                >  1:1926937/1‑71
              GCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTT                                                                >  1:1525027/1‑71
               CGGCTAAAAGTTCGATTCAGATAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTG                                                                         >  1:1982551/1‑61
                 GCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA                                                             <  1:803294/71‑1
                  CTAAAAGTTCGATTCAGACTAGCTTATTACAACTTTTTTACATTTTATTGTGAA                                                                             <  1:2927124/54‑1
                   TAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCAT                                                            >  1:1699054/1‑70
                    AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC                                                          >  1:1715719/1‑71
                    AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT                                                                           >  1:2873433/1‑54
                    AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT                                                                           >  1:9994/1‑54
                    AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA                                                                             >  1:2943438/1‑52
                         TTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT                                                               <  1:1646491/61‑1
                         TTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAA                                                                            <  1:365853/48‑1
                           CGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGG                                                   >  1:2019884/1‑71
                           CGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGG                                                   >  1:1040468/1‑71
                            GATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGG                                                   <  1:562897/70‑1
                            GATTCAGACAAGCTTATTACAACTTTTCTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGG                                                   <  1:1655012/70‑1
                             ATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA                                                           <  1:342823/61‑1
                                 AGACAAGCTTATTACGACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGC                                             <  1:764174/71‑1
                                 AGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC                                                          >  1:2862397/1‑58
                                   ACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCA                                           <  1:994681/71‑1
                                    CAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCAT                                          >  1:2040064/1‑71
                                      AGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCG                                        <  1:968395/71‑1
                                      AGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATC                                         <  1:2713358/70‑1
                                      AGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATC                                         <  1:2207530/70‑1
                                       GCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA                                       >  1:2768711/1‑71
                                           ATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTT                                                               <  1:1053465/43‑1
                                             TACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATC                                         <  1:438689/63‑1
                                             TACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA                                                             >  1:2164351/1‑43
                                             TACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA                                                             >  1:2944029/1‑43
                                              ACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA                                                           >  1:2038109/1‑44
                                              ACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTC                                                              >  1:196277/1‑41
                                              ACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTT                                                                <  1:3114417/39‑1
                                                AACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATC                                         <  1:87603/60‑1
                                                  CTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGAC                                      >  1:2493906/1‑61
                                                   TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA                                                >  1:1979335/1‑50
                                                   TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA                                                             <  1:367611/37‑1
                                                     TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTT                           <  1:2114499/69‑1
                                                     TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTT                           <  1:1637109/69‑1
                                                     TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA                                                             >  1:1782337/1‑35
                                                        TACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTT                        <  1:1446862/69‑1
                                                            TTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGT                  <  1:1810423/71‑1
                                                            TTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA                                                <  1:759438/41‑1
                                                             TTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA                                                >  1:1287737/1‑40
                                                              TTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTT                 <  1:1191422/70‑1
                                                              TTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACG                                     >  1:2745242/1‑50
                                                                 TTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTAT                                               <  1:1621928/37‑1
                                                                   GTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCG            <  1:1060270/70‑1
                                                                   GTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCG            <  1:3078935/70‑1
                                                                    TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAA                                <  1:1994337/49‑1
                                                                      AAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAA         <  1:2035211/70‑1
                                                                       AATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACC       <  1:1082688/71‑1
                                                                        ATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTT                           >  1:2512205/1‑50
                                                                        ATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA                                       >  1:1525879/1‑38
                                                                         TTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCA      <  1:562034/70‑1
                                                                            GGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACG  <  1:1424065/71‑1
                                                                                                                                                   
ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3742861‑3742937
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACG  >  W3110S.gb/3744274‑3744343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.