| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4547372 | 16 (0.480) | 7 (0.260) | 7/82 | NT | 34.9% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 13 (0.480) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
TTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/4547295‑4547372‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggggccaTTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTC < W3110S.gb/4547668‑4547605 TTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATT < 1:972417/71‑1 AGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAT > 1:1587886/1‑71 TGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATT > 1:78894/1‑53 TGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATT > 1:2950434/1‑53 GATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGG > 1:1583736/1‑56 TAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAT > 1:1281631/1‑47 TAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAT > 1:2176610/1‑47 TATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAG > 1:1847424/1‑70 TTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATT > 1:1332180/1‑41 TTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATT > 1:2949422/1‑41 ATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCG < 1:1417133/70‑1 TAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA < 1:1834313/41‑1 GTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAAC < 1:2245841/71‑1 AAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGA > 1:1890551/1‑51 AAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTT > 1:3079825/1‑69 CAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTT < 1:1047250/71‑1 ATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGT < 1:1138550/71‑1 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTC < 1:1715963/70‑1 ATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTAT < 1:714996/48‑1 ATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTT > 1:334143/1‑45 TTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/4547295‑4547372‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggggccaTTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTC < W3110S.gb/4547668‑4547605 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |