New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb 70061 =31 (0.930)24 (0.930)
+CGCGTACAACT
17/78 NT 41.3% intergenic (‑13/‑326) araB/araC L‑ribulokinase/DNA‑binding transcriptional dual regulator
?W3110S.gb 236044 = 57 (1.710)intergenic (‑42/‑23) rnhA/dnaQ ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit

AGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/70125‑70061
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAA  >  W3110S.gb/236044‑236109
                                                                 |||||||||||                                                                  
AGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTA                                                                         >  1:356846/1‑71
       CCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC                                                                   <  1:479072/70‑1
           CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCG                                                                           >  1:2756197/1‑58
           CCTGACGCTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCG                                                                           >  1:1716723/1‑57
               ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTG                                                            <  1:1257225/69‑1
               ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTG                                                            <  1:2315340/69‑1
               ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTG                                                            <  1:374761/69‑1
                 GCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAA                                                                      >  1:601321/1‑57
                      TTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT                                                    >  1:2847115/1‑70
                       TATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGC                                                                            >  1:3117675/1‑45
                           GCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCTTACAACTCAAGTCTGACATAAATGACCGC                                              <  1:1251382/71‑1
                            CAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT                                             <  1:3092285/71‑1
                            CAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA                                                                 <  1:1708160/51‑1
                             AACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA                                            <  1:1589638/71‑1
                              ACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC                                                                   <  1:1152935/47‑1
                                   CTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCA                                      >  1:2793670/1‑71
                                    TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCAC                                     >  1:619425/1‑71
                                    TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC                                                                   <  1:336444/41‑1
                                      CTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTG                                   >  1:2337499/1‑71
                                         TTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA                                >  1:1408096/1‑71
                                           TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT                               >  1:1646753/1‑70
                                           TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA                                >  1:1563881/1‑69
                                            CTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA                             >  1:228248/1‑71
                                             TCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA                             >  1:2039706/1‑70
                                                  ACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC                        >  1:58763/1‑70
                                                   CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATA                                                       <  1:2254980/38‑1
                                                       TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC                        >  1:2049830/1‑65
                                                       TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC                        >  1:1976034/1‑65
                                                       TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATG                                          <  1:503086/47‑1
                                                         TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT                >  1:2991070/1‑71
                                                         TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCG                 >  1:2304341/1‑70
                                                         TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGA                    >  1:1098954/1‑67
                                                         TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCAC                                     >  1:656593/1‑50
                                                            TTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT                                           <  1:1468624/41‑1
                                                                ACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc          >  1:1263577/1‑69
                                                                 CGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTA        >  1:1546287/1‑71
                                                                  GCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAC       >  1:2885711/1‑71
                                                                      ACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc    >  1:516653/1‑69
                                                                       CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA  >  1:2070409/1‑71
                                                                        AACTCAAGTCTGACATAAATGACCGCTATGAGCAC                                     >  1:2856079/1‑35
                                                                         ACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACG                         <  1:2008567/46‑1
                                                                 |||||||||||                                                                  
AGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/70125‑70061
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAA  >  W3110S.gb/236044‑236109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.