| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 26 (0.780) | 28 (0.870) +TC |
24/96 | NT | 69.2% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
TTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAA > W3110S.gb/314385‑314522 | tttGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCctct < 1:2664274/71‑1 (MQ=255) tGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCctct > 1:646247/1‑69 (MQ=255) tGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCtt < 1:753895/70‑1 (MQ=255) gTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTAcc < 1:1316422/71‑1 (MQ=255) aaggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTAcc < 1:2057296‑M1/7‑1 (MQ=255) aaGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAg > 1:287964/1‑71 (MQ=255) ggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTc < 1:1278660‑M1/2‑1 (MQ=255) gATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCa > 1:2309665/1‑68 (MQ=255) tataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:1018826‑M1/59‑71 (MQ=255) aGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATa > 1:1410091/1‑70 (MQ=255) ggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAg > 1:2427413‑M1/55‑70 (MQ=255) ggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGt > 1:983332‑M1/55‑71 (MQ=255) tttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGa < 1:226890‑M1/20‑1 (MQ=255) cAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTa > 1:2329549/1‑55 (MQ=255) aaaGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACAcg > 1:629535/1‑71 (MQ=255) aaaGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACAcg > 1:294249/1‑71 (MQ=255) tcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCgg < 1:1976851‑M1/27‑1 (MQ=255) ttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGc > 1:2626529‑M1/43‑53 (MQ=255) ttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGa > 1:2675123‑M1/43‑62 (MQ=255) cccGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCt < 1:2726698/71‑1 (MQ=255) ccGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTa < 1:2336384/71‑1 (MQ=255) cgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGa > 1:279380‑M1/41‑60 (MQ=255) cGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTaa < 1:311325/71‑1 (MQ=255) gCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAAt > 1:531944/1‑53 (MQ=255) gCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATa > 1:608232/1‑54 (MQ=255) cATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCtt > 1:910697/1‑42 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGacac < 1:39374/57‑1 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt < 1:473068/71‑1 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGac > 1:1804332/1‑52 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTa > 1:702821/1‑61 (MQ=255) cccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:754233‑M1/40‑1 (MQ=255) cccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:1055616‑M1/32‑69 (MQ=255) ttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAg > 1:2138786/1‑40 (MQ=255) ccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc < 1:1534424‑M1/41‑1 (MQ=255) tCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAct > 1:2628239/1‑71 (MQ=255) cTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc > 1:832884/1‑71 (MQ=255) acttttcagcgaggcccgggatcactgaTCTTAccc < 1:2224944‑M1/8‑1 (MQ=255) acttttcagcgaggcccgggatcactgaTCTTAccc < 1:566429‑M1/8‑1 (MQ=255) cttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACAcgc < 1:2103379‑M1/25‑1 (MQ=255) cttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:1961405‑M1/44‑1 (MQ=255) ccGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:2237316/1‑69 (MQ=255) ccGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:2676097/69‑1 (MQ=255) ttcagcgaggcccgggatcactgaTCTTACCCAGCaa < 1:2615858‑M1/13‑1 (MQ=255) ttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTACGTGAGTAAACtctc > 1:2943918‑M1/25‑69 (MQ=255) ttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcag < 1:3003742‑M1/47‑1 (MQ=255) gAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 1:360470/71‑1 (MQ=255) cagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcag > 1:1835531‑M1/23‑69 (MQ=255) agcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca > 1:3079735‑M1/22‑71 (MQ=255) agcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:1537068‑M1/22‑69 (MQ=255) gcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag > 1:599416‑M1/21‑71 (MQ=255) tGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:2137022/1‑50 (MQ=255) gaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:810956‑M1/19‑49 (MQ=255) gaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:1904410‑M1/53‑1 (MQ=255) ccTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:3011371/1‑71 (MQ=255) gcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:3027644‑M1/55‑1 (MQ=255) cccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCt > 1:1641176‑M1/15‑43 (MQ=255) ccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc > 1:1775696‑M1/14‑71 (MQ=255) cAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAct > 1:2731792/1‑49 (MQ=255) aGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa > 1:1367036/1‑41 (MQ=255) aGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa > 1:3125712/1‑41 (MQ=255) tGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcag > 1:1057650/1‑51 (MQ=38) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg < 1:74772‑M1/36‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:1490709‑M1/40‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:3040727‑M1/4‑41 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:1390254‑M1/4‑41 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc < 1:1636683‑M1/43‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACtctc < 1:1344484‑M1/45‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa < 1:130952‑M1/57‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:221202‑M1/4‑64 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:907855‑M1/4‑64 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:2097260‑M1/67‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:2719273‑M1/67‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg < 1:2846777‑M1/36‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:2204316‑M1/3‑46 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca < 1:2399832‑M1/50‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAggtca < 1:2781696‑M1/57‑3 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa < 1:802459‑M1/57‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa < 1:1973672‑M1/68‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa < 1:1918784‑M1/68‑1 (MQ=255) ctctTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaa < 1:1585869/71‑1 (MQ=31) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag > 1:815674‑M1/2‑52 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga < 1:103402‑M1/52‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTc > 1:323404‑M1/2‑61 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa > 1:739697‑M1/2‑70 (MQ=255) | TTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAA > W3110S.gb/314385‑314522 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |