| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2018583 | 0 (0.000) | 23 (0.720) | 19/96 | NT | 100% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
AACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGC > W3110S.gb/2018516‑2018653 | tcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTc > 1:1018672‑M1/56‑71 (MQ=255)aaCGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCat > 1:1743779‑M1/1‑68 (MQ=255) ggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTcc < 1:165886‑M1/17‑1 (MQ=255) gttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTg < 1:1258257‑M1/23‑1 (MQ=255) ttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCa > 1:1188300‑M1/48‑65 (MQ=255) gatgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgcta > 1:1267994‑M1/1‑60 (MQ=255) taaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggc < 1:1095831‑M1/25‑1 (MQ=255) tgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataag > 1:1197932‑M1/1‑58 (MQ=255) gatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaact > 1:1679439‑M1/1‑57 (MQ=255) aatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggcgg > 1:136578‑M1/45‑71 (MQ=255) aatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggcg > 1:1231401‑M1/45‑70 (MQ=255) cTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggt > 1:2123553‑M1/1‑51 (MQ=255) cTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggt < 1:2874612‑M1/71‑21 (MQ=255) cGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCata > 1:1598258‑M1/1‑49 (MQ=255) ggCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttg < 1:2154689‑M1/70‑23 (MQ=255) ggCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttg < 1:2465851‑M1/70‑23 (MQ=255) ggCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttg > 1:1858640‑M1/1‑48 (MQ=255) gcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtct > 1:3073907‑M1/34‑71 (MQ=255) gcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtct > 1:1294019‑M1/34‑71 (MQ=255) cgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTc > 1:2420943‑M1/33‑48 (MQ=255) cTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaacca < 1:1706569‑M1/71‑28 (MQ=255) taataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccg < 1:545730‑M1/41‑1 (MQ=255) ccTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatct > 1:1672792‑M1/1‑41 (MQ=255) ccTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatct < 1:2016108‑M1/71‑31 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTaaa < 1:2859814‑M1/34‑1 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgcc < 1:2185586‑M1/43‑1 (MQ=255) cTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg < 1:2140065‑M1/71‑32 (MQ=255) ccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTaaa < 1:1124646‑M1/34‑1 (MQ=255) ctcaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATg > 1:2451043‑M1/25‑71 (MQ=255) aaGATTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:876320‑M1/1‑37 (MQ=255) gTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaa < 1:2520876‑M1/51‑17 (MQ=255) tttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg < 1:1877607‑M1/65‑32 (MQ=255) tttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaacca < 1:2765967‑M1/61‑28 (MQ=255) tttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggtt < 1:502698‑M1/55‑22 (MQ=255) ttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaactta < 1:2628612‑M1/48‑16 (MQ=255) cttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGa < 1:828586‑M1/54‑1 (MQ=255) cttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGa < 1:1407048‑M1/54‑1 (MQ=255) aTGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgac > 1:1237678‑M1/1‑29 (MQ=255) aTGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgac > 1:1463008‑M1/1‑29 (MQ=255) taagttagcgcttatGGGCGATCCCACCCTCCATCCt > 1:2937053‑M1/16‑37 (MQ=255) agcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACg < 1:1817274‑M1/62‑1 (MQ=255) cgcTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggt < 1:2153548‑M1/71‑51 (MQ=255) cttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAg < 1:1102891‑M1/66‑1 (MQ=255) tGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcct < 1:2294901‑M1/63‑47 (MQ=255) tatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccg < 1:2838467‑M1/41‑1 (MQ=255) tatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccg < 1:3080969‑M1/41‑1 (MQ=255) atGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGa < 1:1618657‑M1/60‑1 (MQ=255) atGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAgt > 1:2663402‑M1/3‑69 (MQ=255) cGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgtt > 1:1676989‑M1/1‑10 (MQ=255) gATCCCACCataagcgctaacttaagggttgaacca > 1:1505278‑M1/1‑9 (MQ=255) tCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgaggcctcggtgcctcgttaagacg < 1:198022‑M1/71‑65 (MQ=255) cccACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacga > 1:1251032‑M1/1‑6 (MQ=255) ccACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGc < 1:1022717/71‑1 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcc > 1:2962711‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcc > 1:2146477‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagac > 1:631459‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaacaatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcc > 1:880383‑M1/1‑2 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcct > 1:386538‑M1/1‑1 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcct < 1:1241311‑M1/71‑71 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgc > 1:2156964‑M1/1‑1 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgc < 1:1370850‑M1/40‑40 (MQ=255) | AACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGC > W3110S.gb/2018516‑2018653 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |