| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4547364 = | 23 (0.690) | 4 (0.150) | 4/82 | NT | 20.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 13 (0.480) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
ATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAA > W3110S.gb/4547294‑4547428 | ctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:3107812‑M1/1‑1 (MQ=255) ttAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATT < 1:972417‑M1/71‑1 (MQ=255) tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt > 1:2388255‑M1/68‑68 (MQ=255) tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt > 1:639057‑M1/68‑68 (MQ=255) tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgg > 1:1531637‑M1/68‑71 (MQ=255) agaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAt > 1:1587886‑M1/1‑70 (MQ=255) tgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg < 1:2976549‑M1/5‑1 (MQ=255) gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:1595527/70‑1 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt < 1:1374459/71‑1 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt > 1:1399670/1‑71 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt < 1:773830/71‑1 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc > 1:1324981/1‑71 (MQ=255) gTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc > 1:886681/1‑70 (MQ=255) tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt > 1:1194984/1‑64 (MQ=255) tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATT > 1:78894‑M1/1‑53 (MQ=255) tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATT > 1:2950434‑M1/1‑53 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat > 1:996194/1‑71 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata < 1:2866173/70‑1 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGG > 1:1583736‑M1/1‑56 (MQ=255) agtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCat > 1:1787838‑M1/48‑71 (MQ=255) tAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAT > 1:1281631‑M1/1‑47 (MQ=255) tAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAT > 1:2176610‑M1/1‑47 (MQ=255) tATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaag > 1:1847424‑M1/1‑50 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:1852077/69‑1 (MQ=255) ttGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg > 1:2226216/1‑70 (MQ=255) ttGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATT > 1:2949422‑M1/1‑41 (MQ=255) ttGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATT > 1:1332180‑M1/1‑41 (MQ=255) caacactgcactgttttcccccaaaagatgaaacatTTgg > 1:3093542‑M1/37‑40 (MQ=255) caacactgcacagttttcccccaaaagatgaaacatTTgg > 1:2015873‑M1/37‑40 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcg < 1:1417133‑M1/70‑26 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:1667635/43‑1 (MQ=255) taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:939432/42‑1 (MQ=255) taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt > 1:1017008/1‑71 (MQ=255) taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA < 1:1834313‑M1/41‑1 (MQ=255) ctgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt > 1:2699109‑M1/32‑70 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCat < 1:730778/55‑1 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataa > 1:2941243/1‑56 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataa > 1:317727/1‑56 (MQ=255) gTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaac < 1:2245841‑M1/71‑35 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagagga > 1:1890551‑M1/1‑34 (MQ=255) aaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc < 1:2274103/71‑1 (MQ=255) aaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:3131501/38‑1 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa > 1:402074‑M1/22‑70 (MQ=255) aaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttttt > 1:3079825‑M1/1‑30 (MQ=255) aaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt < 1:2999701/57‑1 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtt < 1:1047250‑M1/71‑45 (MQ=255) ataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgt < 1:1138550‑M1/71‑52 (MQ=255) taCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttt < 1:1738942/54‑1 (MQ=255) taCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg > 1:2906976/1‑60 (MQ=255) tgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTa > 1:1845585‑M1/9‑71 (MQ=255) aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaa < 1:2342737/71‑1 (MQ=255) | ATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAA > W3110S.gb/4547294‑4547428 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |