| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 44 (1.320) | 26/100 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGT > W3110S.gb/575930‑576051 | atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1631316‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2667877‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:362630‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1739463‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2131282‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1364315‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1359509‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1294849‑M2/71‑71 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:925860‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:157009‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2931556‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2010252‑M2/70‑70 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2582440‑M2/70‑70 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:934797‑M2/3‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:1179643‑M2/3‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:2184334‑M2/3‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:2903081‑M2/68‑70 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:1101505‑M2/3‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:399054‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:2876218‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:3040880‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:2631822‑M2/4‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:1179353‑M2/4‑1 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:974052‑M2/3‑1 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:2435479‑M2/4‑1 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGt < 1:2507512‑M2/5‑1 (MQ=255) gaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2966200‑M2/66‑66 (MQ=255) gaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:2419140‑M2/66‑71 (MQ=255) aaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTAc > 1:296851‑M2/65‑71 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:999664‑M2/64‑64 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:329746‑M2/8‑1 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:1103820‑M2/8‑1 (MQ=255) cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:2661059‑M2/3‑1 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:2726408‑M2/60‑65 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:713975‑M2/8‑1 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATg > 1:3121662‑M2/60‑71 (MQ=255) gttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:1169918‑M2/59‑61 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATg < 1:183808‑M2/12‑1 (MQ=255) ctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGc < 1:1950585‑M2/13‑1 (MQ=255) tatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGc > 1:1915561‑M2/55‑70 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:2469860‑M2/54‑57 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGc < 1:1728611‑M2/16‑1 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCt < 1:2060154‑M2/17‑1 (MQ=255) ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTa > 1:2143460‑M2/52‑69 (MQ=255) ccagatgacaaacatcatctcatatcagggacttgttcgcaccttccTTa < 1:616831‑M2/3‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1018766‑M2/1‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:1868753‑M2/25‑1 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaa < 1:2065099‑M2/26‑1 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGc > 1:2158702‑M2/45‑57 (MQ=255) atgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:877852‑M2/1‑1 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1534235‑M2/2‑1 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttcctt > 1:2548438‑M2/42‑43 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttcctt > 1:833626‑M2/42‑43 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1835779‑M2/42‑42 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:469513‑M2/42‑44 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTg > 1:767845‑M2/42‑71 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTg > 1:813263‑M2/42‑71 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1537928‑M2/2‑1 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:434702‑M2/41‑46 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:1037830‑M2/40‑43 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1641482‑M2/2‑1 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttcct < 1:1811480‑M2/1‑1 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttcct < 1:2058215‑M2/1‑1 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGcc > 1:1559812‑M2/39‑70 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttcct < 1:1909818‑M2/1‑1 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAg > 1:2455047‑M2/37‑40 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAg > 1:1207087‑M2/37‑40 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:415127‑M2/37‑42 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:2223975‑M2/37‑42 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:365746‑M2/37‑42 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAc < 1:2948352‑M2/19‑1 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:2080412‑M2/37‑63 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:1806404‑M2/8‑1 (MQ=255) atgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:1616805‑M2/8‑1 (MQ=255) tcatatcagggacttgttcgcaccttccTTAGTACt < 1:603922‑M2/8‑1 (MQ=255) tcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGcc < 1:304121‑M2/32‑1 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAttttt > 1:248492‑M2/27‑71 (MQ=255) atcagggaattgttcgcaccttccTTAGTACTGATGCAGCTAcagcag > 1:26452‑M2/25‑48 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTa > 1:129830‑M2/24‑41 (MQ=255) tcagggacttgttcccaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTg < 1:693669‑M2/36‑1 (MQ=255) agggacttgttcgcaccttccTTAGTACTGATGCAGCTAcagcag > 1:1459711‑M2/22‑45 (MQ=255) agggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:1582330‑M2/22‑48 (MQ=255) agggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATc < 1:1618015‑M2/50‑1 (MQ=255) agggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATc > 1:3019266‑M2/22‑71 (MQ=255) gggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCg < 1:2380487‑M2/51‑1 (MQ=255) ggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGt < 1:499542‑M2/52‑1 (MQ=255) ggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGt < 1:1955509‑M2/52‑1 (MQ=255) ggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGt < 1:2649260‑M2/52‑1 (MQ=255) cttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAt < 1:1848150‑M2/28‑1 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGt > 1:2232963‑M2/14‑65 (MQ=255) gcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttt < 1:1010208‑M2/44‑1 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTaa > 1:538842‑M2/4‑43 (MQ=255) | ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGT > W3110S.gb/575930‑576051 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |