| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 713380 = | 25 (0.750) | 10 (0.330) | 10/92 | NT | 31.3% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | W3110S.gb | = 4125340 | 21 (0.680) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
CACGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGCCCGCC > W3110S.gb/4125274‑4125410 | cacGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattc > 1:1578299‑M2/1‑67 (MQ=255)cacGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAatt < 1:176604‑M2/70‑4 (MQ=255) gTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagc < 1:3013283‑M2/71‑8 (MQ=255) gTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagc < 1:595504‑M2/71‑8 (MQ=255) gTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagc < 1:2999511‑M2/71‑8 (MQ=255) gTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATtctc > 1:637100/1‑70 (MQ=255) tAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagct > 1:1998663‑M2/1‑63 (MQ=255) aaaaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaa > 1:680510‑M2/1‑61 (MQ=255) gACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCg < 1:1535802/70‑1 (MQ=255) cGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAaata < 1:1799636/51‑1 (MQ=255) gAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAat > 1:1652055‑M2/1‑50 (MQ=255) aaCTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGa < 1:1651041/71‑1 (MQ=255) aCTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactg < 1:1335352‑M2/70‑23 (MQ=255) aCTGCTCGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactgg > 1:1108838‑M2/1‑48 (MQ=255) ctgctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGaaa < 1:1330187/71‑1 (MQ=255) ctgctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGa < 1:1478443/69‑1 (MQ=255) gctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGaaa > 1:2288906/1‑69 (MQ=255) gCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGt < 1:2472089/69‑1 (MQ=255) tGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTAttt < 1:1566180/69‑1 (MQ=255) tGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTg < 1:1151336/70‑1 (MQ=255) tGTACAAACCAGGAGTCGTTTCACCCGAGAAAAAATAa < 1:1908910‑M2/38‑2 (MQ=255) tACAAACCAGGATTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGAtt < 1:888954/71‑1 (MQ=255) cATACCAGGAGTCGTTTCACCCGCGAAAAAATAattca < 1:3088644‑M2/38‑6 (MQ=255) aaaCCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTa < 1:612546/61‑1 (MQ=255) aaCCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTg > 1:1136230/1‑64 (MQ=255) ccAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattg > 1:955964‑M2/1‑29 (MQ=255) ggAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggatta > 1:1016231‑M2/1‑26 (MQ=255) tCGTTTCACCCGCGAAAAAATAattcagctaagacactg > 1:58605‑M2/1‑22 (MQ=255) tCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGaa < 1:619499/36‑1 (MQ=255) gTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTg > 1:243935/1‑71 (MQ=255) tttCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTAttt < 1:2261769/51‑1 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgat < 1:2469329‑M2/70‑54 (MQ=255) cACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgat < 1:1617814‑M2/69‑54 (MQ=255) cccGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaac > 1:1012906‑M2/1‑14 (MQ=255) ccGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAAtt < 1:2592964/61‑1 (MQ=255) cgcgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGa < 1:49701/71‑1 (MQ=255) cgAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaag > 1:2454475‑M2/1‑10 (MQ=255) cgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTa > 1:29893/1‑39 (MQ=255) cgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTAttt < 1:1121874/42‑1 (MQ=255) cgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTAttt < 1:644628/42‑1 (MQ=255) aaaaaaTAATTCTCAAGGAGAAGCGGATGAAACAGTa > 1:1825176/1‑37 (MQ=255) aaaaaaTAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGAtttt < 1:661088/71‑1 (MQ=255) aaaTAattcagctaagacactgcactggattaagatgaa > 1:288607‑M2/1‑5 (MQ=255) aaaTAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGa > 1:1053243/1‑64 (MQ=255) aataatTCTCAAGGAGAAGCGGATGAAACAGTATTTg < 1:1984298/37‑1 (MQ=255) taatTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGCCCGc < 1:2936086/71‑1 (MQ=255) aatTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTc > 1:1762464/1‑45 (MQ=255) aatTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGCCCGcc > 1:2597156/1‑71 (MQ=255) | CACGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGCCCGCC > W3110S.gb/4125274‑4125410 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |