| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 37 (1.130) | 29/98 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 105 total aligned reads displayed.
GTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920208‑3920348 | gcctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:2738934‑M2/1‑1 (MQ=255)gcctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:7633‑M2/1‑1 (MQ=255)gTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa < 1:2462793/71‑1 (MQ=255) gAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAaca > 1:1621006/1‑71 (MQ=255) ctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca > 1:2721562‑M2/69‑71 (MQ=255) ctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca > 1:1964692‑M2/69‑71 (MQ=255) cagtccggaacaatttgaaaacaagaccctcgcttaggcctgtgtccatattacgtgggtaggatcacact > 1:3014673‑M2/67‑70 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac < 1:2327718‑M2/4‑1 (MQ=255) aGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACAC < 1:742387‑M2/70‑1 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacact > 1:2048171‑M2/66‑69 (MQ=255) tccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCt > 1:1030765‑M2/64‑71 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:1495847‑M2/62‑70 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct < 1:2541080‑M2/71‑7 (MQ=255) ggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:636142‑M2/1‑1 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTAGGAACACtgatctta > 1:1299051‑M2/1‑61 (MQ=255) cTGACCTTCGTCCAGAGATTTGTATCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc > 1:185070‑M2/1‑60 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATc > 1:764441‑M2/53‑71 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATc > 1:3022401‑M2/52‑70 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATc < 1:1718194‑M2/19‑1 (MQ=255) gaaaacaagaacctcgcttaggcctgtgtccatattacgtgggttggatcacac < 1:2467448‑M2/4‑1 (MQ=255) gaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac < 1:2996807‑M2/4‑1 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata > 1:2988670‑M2/1‑52 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:2248046‑M2/1‑52 (MQ=255) aaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:508865‑M2/1‑1 (MQ=255) aaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt > 1:1028465‑M2/49‑69 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:2356384‑M2/65‑20 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatca > 1:1166728‑M2/43‑43 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt > 1:1989013‑M2/43‑70 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac > 1:1235072‑M2/1‑45 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggaca < 1:812184‑M2/70‑26 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:3097722‑M2/1‑1 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:2327419‑M2/1‑1 (MQ=255) aTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAac < 1:2600862/41‑1 (MQ=255) ctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt < 1:1599096‑M2/6‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa > 1:620587‑M2/38‑48 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTCAGAGCCATCGTCAGGAGtgatg > 1:242025‑M2/38‑69 (MQ=255) tGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggc < 1:2828813‑M2/71‑32 (MQ=255) tGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtcgacacgc < 1:1392466‑M2/68‑29 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatg > 1:42254‑M2/37‑68 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:648195‑M2/37‑71 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:1570355‑M2/37‑71 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAg > 1:2354769‑M2/36‑62 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag < 1:2126444‑M2/35‑1 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggct > 1:2483001‑M2/1‑38 (MQ=255) cttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:794311‑M2/21‑1 (MQ=255) aCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaag > 1:1037454‑M2/1‑36 (MQ=255) aCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:1177142‑M2/45‑10 (MQ=255) ccATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt < 1:327657‑M2/71‑37 (MQ=255) ccATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt > 1:1009233‑M2/1‑35 (MQ=255) ccATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt > 1:2404588‑M2/1‑35 (MQ=255) aggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccg < 1:2081266‑M2/38‑1 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgcacacg < 1:3150993‑M2/60‑28 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg < 1:1593123‑M2/53‑22 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg > 1:2388524‑M2/28‑56 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg > 1:2606188‑M2/28‑56 (MQ=255) cGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct > 1:1171946‑M2/1‑31 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:1848904‑M2/1‑30 (MQ=255) gtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt > 1:2741329‑M2/26‑71 (MQ=255) cTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa < 1:2532623‑M2/61‑35 (MQ=255) cTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:2314136‑M2/1‑27 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt < 1:2301863‑M2/48‑1 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaact > 1:220463‑M2/1‑24 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTc > 1:3028182‑M2/21‑42 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAg < 1:474835‑M2/51‑1 (MQ=255) aTAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggct < 1:1454449‑M2/55‑33 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:1096247‑M2/21‑1 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:2874173‑M2/21‑1 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:2025333‑M2/24‑1 (MQ=255) tAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctca > 1:317209‑M2/1‑22 (MQ=255) aGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct < 1:192767‑M2/68‑48 (MQ=255) aGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac < 1:3031534‑M2/47‑27 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:2290015‑M2/21‑1 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:1866778‑M2/17‑42 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt < 1:573080‑M2/55‑1 (MQ=255) gCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt < 1:1810995‑M2/71‑52 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGt > 1:2692748‑M2/16‑69 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg < 1:2383644‑M2/56‑1 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg > 1:1380224‑M2/15‑70 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:2642587‑M2/1‑17 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:1520800‑M2/1‑17 (MQ=255) tgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAAcc < 1:758740‑M2/60‑1 (MQ=255) ggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCg > 1:3024456‑M2/10‑62 (MQ=255) ggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAt < 1:8235‑M2/62‑1 (MQ=255) gtgtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt < 1:3084433‑M2/70‑59 (MQ=255) gtgtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt < 1:1617123‑M2/70‑59 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaagtg > 1:700677‑M2/1‑10 (MQ=255) aggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCtt > 1:1983424‑M2/7‑51 (MQ=255) aggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt > 1:2562283‑M2/7‑70 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact > 1:2025689‑M2/1‑9 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgac > 1:2727111‑M2/1‑9 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:1501838‑M2/1‑9 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAtttt < 1:2849782‑M2/65‑1 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaag < 1:2708971‑M2/42‑36 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaa > 1:441239‑M2/1‑7 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaa < 1:1745551‑M2/41‑35 (MQ=255) gAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:2730485‑M2/1‑6 (MQ=255) gAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:1025840‑M2/1‑6 (MQ=255) gAACACtgatcttacccagcaatagtggacacgcggctaagt > 1:1746716‑M2/1‑6 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:2831096‑M2/1‑4 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:562489‑M2/64‑1 (MQ=255) | GTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920208‑3920348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |