| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 32 (0.960) | 23/100 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
TATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTAAAG > W3110S.gb/3932868‑3933003 | tATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:3089339‑M2/71‑6 (MQ=255) tGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc < 1:1637815‑M2/70‑7 (MQ=255) tGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:1577443‑M2/1‑64 (MQ=255) gtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCgg > 1:1775696‑M2/61‑71 (MQ=255) acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGc < 1:3027644‑M2/13‑1 (MQ=255) gCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacc < 1:1986459‑M2/70‑11 (MQ=255) ctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTc < 1:1904410‑M2/16‑1 (MQ=255) tctTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc > 1:1221013‑M2/1‑57 (MQ=255) ctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGc > 1:599416‑M2/54‑71 (MQ=255) tgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt > 1:3079735‑M2/53‑71 (MQ=255) tCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgat > 1:276641‑M2/1‑54 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt > 1:1537068‑M2/51‑69 (MQ=255) ctgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTg > 1:1835531‑M2/50‑69 (MQ=255) ctgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:3003742‑M2/22‑1 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTg > 1:3028854/1‑53 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt > 1:3136259‑M2/1‑53 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt > 1:1999776‑M2/1‑53 (MQ=255) cGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctaccc < 1:1274813‑M2/63‑12 (MQ=255) gagagtttactcacgtagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa > 1:2943918‑M2/48‑69 (MQ=255) gTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatat > 1:2839508‑M2/1‑51 (MQ=255) gTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatat < 1:2055755‑M2/71‑21 (MQ=255) tCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtg > 1:74923‑M2/1‑50 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAg < 1:1961405‑M2/25‑1 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga > 1:1997006‑M2/1‑48 (MQ=255) gtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTgg < 1:1534424‑M2/28‑1 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:754233‑M2/29‑1 (MQ=255) gCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:2283631‑M2/51‑6 (MQ=255) tactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg > 1:1055616‑M2/41‑69 (MQ=255) tataACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacaca > 1:2246623‑M2/1‑42 (MQ=255) ataACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggc < 1:3014714‑M2/71‑31 (MQ=255) taACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcc > 1:165545‑M2/1‑40 (MQ=255) aCCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTg > 1:1860484/1‑38 (MQ=255) aCCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctaccc > 1:3117104‑M2/1‑38 (MQ=255) ttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTc > 1:810956‑M2/34‑49 (MQ=255) ccGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcct < 1:2246117‑M2/69‑33 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCggg > 1:1641176‑M2/32‑43 (MQ=255) ccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa < 1:1976851‑M2/42‑1 (MQ=255) cTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:579665‑M2/52‑20 (MQ=255) cTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:2528788‑M2/52‑20 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgta < 1:3061081‑M2/48‑17 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgta < 1:1025595‑M2/48‑17 (MQ=255) gcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAg < 1:2103379‑M2/25‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:279380‑M2/23‑60 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa > 1:2675123‑M2/23‑62 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:226890‑M2/49‑1 (MQ=255) aaTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttct > 1:1654077‑M2/1‑26 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttg > 1:1258303‑M2/1‑25 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca > 1:642505‑M2/1‑25 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca > 1:218171‑M2/1‑25 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc > 1:983332‑M2/20‑71 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc > 1:2427413‑M2/19‑70 (MQ=255) aaaaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcg > 1:2909120‑M2/1‑21 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:2615858‑M2/22‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata > 1:1018826‑M2/16‑71 (MQ=255) gctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa > 1:2626529‑M2/14‑53 (MQ=255) gggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGt < 1:2224944‑M2/26‑1 (MQ=255) gggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGt < 1:566429‑M2/26‑1 (MQ=255) gCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgtt < 1:1408098‑M2/62‑49 (MQ=255) ggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCtt < 1:2057296‑M2/60‑1 (MQ=255) ccaccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttc < 1:661962‑M2/71‑61 (MQ=255) caccGAAGTGtgatcctatccacgtaatatggacacaggcctaagcgagg < 1:1304141‑M2/50‑41 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttcc < 1:919609‑M2/71‑62 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttcc < 1:521031‑M2/71‑62 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggtt < 1:1863156‑M2/52‑43 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggtt < 1:2046025‑M2/52‑43 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgagg < 1:768677‑M2/50‑41 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacacaggcctaa > 1:99616‑M2/1‑10 (MQ=255) gatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATAcc < 1:1278660‑M2/58‑1 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGa > 1:123299‑M2/3‑41 (MQ=255) aGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGt > 1:1325971/1‑70 (MQ=255) aGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGt > 1:1872444/1‑70 (MQ=255) tGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTaaa < 1:943098/71‑1 (MQ=255) gATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTa > 1:1782923/1‑68 (MQ=255) gATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTAAAg > 1:1717297/1‑71 (MQ=255) | TATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTAAAG > W3110S.gb/3932868‑3933003 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |