| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2855747 | 18 (0.540) | 10 (0.310) | 7/98 | NT | 25.8% | intergenic (‑285/‑2) | ygbA/mutS | hypothetical protein/methyl‑directed mismatch repair protein |
| ? | W3110S.gb | 4124505 = | 40 (1.220) | coding (1/837 nt) | dam | DNA adenine methylase | |||||
TGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACG > W3110S.gb/4124442‑4124572 | tGAAGCGCTGGATGCTGTCGGCGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATgaag > 1:1824902/1‑69 (MQ=255) gAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATgaagaa > 1:1361916/1‑70 (MQ=255) aaGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaa < 1:23308/70‑1 (MQ=255) aaGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaa > 1:2252779/1‑70 (MQ=255) aGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa < 1:656456/71‑1 (MQ=255) aGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa < 1:2136820/71‑1 (MQ=255) aGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa > 1:3100106/1‑71 (MQ=255) aGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa < 1:2943594/71‑1 (MQ=255) gATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCt < 1:2540761/71‑1 (MQ=255) gATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCt < 1:2937685/71‑1 (MQ=255) gCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCtttt > 1:183932/1‑71 (MQ=255) tCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:940759/70‑1 (MQ=255) tCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:2912646/70‑1 (MQ=255) tCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGa < 1:1292562/71‑1 (MQ=255) ggAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAg < 1:260288/71‑1 (MQ=255) ggAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAg > 1:2807065/1‑71 (MQ=255) ggAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAg < 1:1169961/71‑1 (MQ=255) gAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:37178/67‑1 (MQ=255) aGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCtttttt > 1:696283/1‑65 (MQ=255) aGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTg > 1:1849223/1‑71 (MQ=255) tctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa < 1:2004425/48‑1 (MQ=255) tctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaa > 1:1595903/1‑47 (MQ=255) tctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa < 1:2904113/70‑1 (MQ=255) ctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTgg < 1:20120/66‑1 (MQ=255) tcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGaa > 1:3140966/1‑61 (MQ=255) cacaGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaa > 1:3069434/1‑42 (MQ=255) caGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGc < 1:2535242/63‑1 (MQ=255) taatatcagtaaaccggacataacccATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTa < 1:1014154‑M2/44‑1 (MQ=255) tatcagtaaaccggacataacccATGAAGAAAAATc > 1:159597‑M2/24‑36 (MQ=255) aaGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:428249/46‑1 (MQ=255) gtgtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGaa > 1:1777320/1‑45 (MQ=255) gtgtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGCGCa < 1:613553/52‑1 (MQ=255) gagtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg > 1:1100561/3‑43 (MQ=255) tgtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATc > 1:1743763/1‑64 (MQ=255) taaaccggacataacccATGAAGAAAAATCGCGCtttttt < 1:687058‑M2/23‑1 (MQ=255) gtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGaa > 1:1683327/1‑43 (MQ=255) gtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt > 1:1550578/1‑71 (MQ=255) tAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGa < 1:2373046/41‑1 (MQ=255) aaaccggacataacccATGAAGAAAAATCGCGCttttt > 1:2787283‑M2/17‑38 (MQ=255) aaccggacataacccATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgg > 1:1529677‑M2/16‑50 (MQ=255) aaccggacataacccATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtga < 1:1247566‑M2/56‑1 (MQ=255) aTTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat < 1:412562/71‑1 (MQ=255) aTTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat < 1:1400144/71‑1 (MQ=255) ttagttagTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatg < 1:2992547/71‑1 (MQ=255) ccggacataacccATGAAGAAAAATCGCGCtttttt > 1:1546388‑M2/14‑36 (MQ=255) tagttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga > 1:2328856/1‑71 (MQ=255) tagttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga > 1:2666468/1‑71 (MQ=255) cggacataacccATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTa < 1:2499122‑M2/44‑1 (MQ=255) acataacccATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGatat > 1:1699267‑M2/10‑71 (MQ=255) ataacccATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTa < 1:150206‑M2/64‑1 (MQ=255) gtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTa < 1:1233002/70‑1 (MQ=255) acccATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa < 1:1818491‑M2/66‑1 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACg > 1:536713/1‑71 (MQ=255) | TGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACG > W3110S.gb/4124442‑4124572 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |