New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	3873994 =	86 (1.530)	4 (0.080)	4/94	NT	5.2%	coding (87/843 nt)	yibA	lyase containing HEAT‑repeat
	?	W3110S.gb	4016463 =	66 (1.270)					pseudogene (68/246 nt)	yrhC	ECK3468:JW5678:b4552; hypothetical protein fragment

ACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/3874067‑3873994 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTG  >  W3110S.gb/4016463‑4016532                                                                                                                                                  ACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTA                                                                           >  1:2854358/1‑71   CAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTATT                                                                         >  1:3903280/1‑71    AGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTATTT                                                                        <  1:1872425/71‑1                CAAGTAAAGAGTATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTATT                                                                         <  1:4299245/58‑1                CAAGTAAAGAGTATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTATT                                                                         <  1:3174915/58‑1                  AGTAAAGAGTATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTATTT                                                                        >  1:623864/1‑57                  AGTAAAGAGTATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTATTT                                                                        >  1:3138216/1‑57                         AGTATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTATT                                                                         <  1:874267/49‑1                            ATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTATTT                                                                        <  1:2762223/47‑1                               GTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTA                                                                           >  1:5089590/1‑41                                TTTATATAATCAATGTAAGAAACTAAATGATGATGAATTA                                                                           <  1:2708882/40‑1                                   ATATAATCAATGTAAGAAACTAAATGATGATGAATTAT                                                                          <  1:1802780/38‑1                                                    AACTAAATGATGATGAATTATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTT                        >  1:4225684/1‑71                                                       TAAATGATGATGAATTATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTT                                 <  1:3145317/59‑1                                                        AAATGATGATGAATTATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTT                           >  1:823489/1‑64                                                          ATGATGATGAATTATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGG                  >  1:1331472/1‑71                                                                       ATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGAC      <  1:768307/70‑1                                                                       ATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGA       <  1:3951323/69‑1                                                                        TTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTG                   >  1:2099667/1‑56                                                                        TTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCT                    >  1:1941500/1‑55                                                                        TTTAGTTTCTTACATTTATTATATAAACAATACTCTTTACTTGCCTTTCTTTTCT                    >  1:3802535/1‑55                                                                          TAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTG  >  1:1561188/1‑71                                                                                                                                                  ACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATCAATGTAAGAAACTAAATGATGATGAATTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/3874067‑3873994 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTG  >  W3110S.gb/4016463‑4016532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.