New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 4194827	65 (1.160)	3 (0.060)	3/92	NT	5.1%	coding (7/354 nt)	rplR	50S ribosomal subunit protein L18
	?	W3110S.gb	= 4194840	53 (1.040)					coding (20/354 nt)	rplR	50S ribosomal subunit protein L18

AAGGGTGTTCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/4194755‑4194827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggataCGAGCAGATTTCTTATCCATAGTGTTACCTTACTTCTTCTTAGCCTCTTTGGTACGCACGACTTCG  <  W3110S.gb/4194840‑4194775                                                                                                                                             AAGGGTGTTCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGA                                                                      >  1:1725450/1‑71   GGGTGTTCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGA                                                                      >  1:2408238/1‑69   GGGTGTTCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGA                                                                      >  1:5076323/1‑69        TTCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGAT                                                                     <  1:1240152/65‑1        TTCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGA                                                                      >  1:3987422/1‑64              ACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTACGGATACGAGCAGATT                                                          <  1:535205/70‑1                        AGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATACGAGCAGATTTCTTATCCAT                                                <  1:2307026/70‑1                            GTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGG                                                                       >  1:3742918/1‑43                              GCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGG                                                                       >  1:2470803/1‑41                                                 AAGAAGTAAGGTAACACTATGGATACGAGCAGATTTCTTATC                                                   >  1:3451551/1‑42                                                                     GGATACGAGCAGATTTCTTATCCATAGTGTTACCTTACTTCTTCTTAGCCTCTTTGGTACGCACGACTTCG  <  1:3815489/71‑1                                                                     GGATACGAGCAGATTTCTTATCCATAGTGTTACCTTACTTCTTCTTAGCCTCTTTGG                <  1:4646315/57‑1                                                                      GATACGAGCAGATTTCTTATCCATAGTGTTACCTTACTTCTTCTTAGCCTCTTT                  <  1:1130581/54‑1                                                                        TACGAGCAGATTTCTTATCCATAGTGTTACCTTACTTCTTCTTAGCCTCTTTGGTACGCACGACTTC   >  1:5076704/1‑67                                                                                                                                             AAGGGTGTTCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/4194755‑4194827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggataCGAGCAGATTTCTTATCCATAGTGTTACCTTACTTCTTCTTAGCCTCTTTGGTACGCACGACTTCG  <  W3110S.gb/4194840‑4194775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.