| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 236798 | 40 (0.710) | 15 (0.570) +TTTAATATCAGTAAACCGGACATAACC |
9/48 | NT | 37.3% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 67 (1.190) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
AGATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGAAA > W3110S.gb/236728‑236868 | agaTTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATaa < 1:2785666/71‑1 (MQ=255) tGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtt > 1:2691844‑M1/1‑67 (MQ=255) tGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATAc > 1:510000/1‑71 (MQ=255) gCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATAc < 1:4729937/70‑1 (MQ=255) aGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaata < 1:5162631‑M1/71‑8 (MQ=255) cTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCtgt > 1:2644622/1‑70 (MQ=255) tCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatat > 1:2539395‑M1/1‑61 (MQ=255) aTGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGaa < 1:1512838/70‑1 (MQ=255) tGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagta < 1:2982431‑M1/71‑14 (MQ=255) tGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGAGAGCATAAtttaatatcagta < 1:5134297‑M1/71‑14 (MQ=255) gAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAgg > 1:2958740/1‑71 (MQ=255) aaGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaa < 1:3745499‑M1/70‑15 (MQ=255) aaGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaa < 1:326608‑M1/70‑15 (MQ=255) aGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaac > 1:599454‑M1/1‑55 (MQ=255) gTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccgga > 1:2753611‑M1/1‑50 (MQ=255) gTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaa > 1:2779475/1‑70 (MQ=255) tctcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCtg > 1:1946191/1‑56 (MQ=255) tctcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaa < 1:3495746/71‑1 (MQ=255) tctcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaa < 1:367678/71‑1 (MQ=255) tctcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaa < 1:1384937/71‑1 (MQ=255) tctcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaa > 1:2995804/1‑70 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatca > 1:3898642‑M1/1‑47 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGaaa > 1:942785/1‑59 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa > 1:614000/1‑70 (MQ=255) gATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataac > 1:618562‑M1/1‑45 (MQ=255) gATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacat < 1:2580480‑M1/68‑24 (MQ=255) gATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAttt < 1:647320‑M1/48‑4 (MQ=255) gATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGTCGCTAAAAATa < 1:2499386/70‑1 (MQ=255) gATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa > 1:3048245/1‑68 (MQ=255) gATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATa < 1:2670404/70‑1 (MQ=255) cTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGa > 1:4348711/1‑71 (MQ=255) tGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGAc > 1:4145280/1‑71 (MQ=255) tGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGAc > 1:2227937/1‑71 (MQ=255) gTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCg < 1:4709794/67‑1 (MQ=255) tGCAGAAGAATGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTg < 1:3637795/71‑1 (MQ=255) tGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAACACCTGTGAAAGGCGCTAAAAATAGCGACTTg < 1:4880682/71‑1 (MQ=255) gaagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcggtaaaccggacataacccatgaagaaa < 1:3209353‑M1/71‑38 (MQ=255) gaagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaa < 1:2546348‑M1/71‑38 (MQ=255) aagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa < 1:3707782/56‑1 (MQ=255) aagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGa > 1:3413802/1‑71 (MQ=255) agaaAGGCGGAATTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaa < 1:4959083‑M1/71‑40 (MQ=255) agaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaa < 1:4548070‑M1/71‑40 (MQ=255) agaaAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACtt < 1:410840/64‑1 (MQ=255) agaaAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGAt > 1:2557710/1‑71 (MQ=255) gaaAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCtgt > 1:2712781/1‑39 (MQ=255) gaaAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGc > 1:4009359/1‑67 (MQ=255) gaaAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGAtt < 1:4227249/71‑1 (MQ=255) aaaGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGc < 1:3450062/57‑1 (MQ=255) aaGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGAtttt > 1:4388260/1‑71 (MQ=255) aaGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGAttt < 1:4383188/70‑1 (MQ=255) ggCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTg < 1:2716224/71‑1 (MQ=255) ggAAGTTGCCTC‑‑GCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTgcagca < 1:4889146/71‑1 (MQ=255) gAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTgcag > 1:775129/1‑70 (MQ=255) gAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTgcag > 1:633993/1‑70 (MQ=255) aaGTGGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTgcagca < 1:2409765/71‑1 (MQ=255) aGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttt < 1:1929044‑M1/71‑51 (MQ=255) gTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctttttt < 1:811342‑M1/71‑52 (MQ=255) gTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgc > 1:1621655‑M1/1‑20 (MQ=255) ttGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttg < 1:4486675‑M1/71‑53 (MQ=255) ttGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttg < 1:2225046‑M1/71‑53 (MQ=255) ttGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttg < 1:2562799‑M1/71‑53 (MQ=255) ttGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttg < 1:2441917‑M1/71‑53 (MQ=255) gCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACtt > 1:3303002/1‑49 (MQ=255) gCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGa > 1:2843711/1‑71 (MQ=255) ccTCTGGCGAGCATAAtttaatatcagtaaaccggacataaccgatgaagaaaaatcgcgcttttttgaa < 1:4410597‑M1/70‑55 (MQ=255) ccTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACt < 1:4788676/47‑1 (MQ=255) ctctGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAAt < 1:1106148/39‑1 (MQ=255) ctctGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGc < 1:1029686/42‑1 (MQ=255) gAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagg < 1:2379885‑M1/71‑64 (MQ=255) gCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggg > 1:505233‑M1/1‑6 (MQ=255) gCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaa > 1:4209103‑M1/1‑6 (MQ=255) tAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtggg < 1:3850952‑M1/62‑60 (MQ=255) aaaTACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTgc > 1:4540512/1‑47 (MQ=255) atttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggggcaag > 1:289019‑M1/1‑1 (MQ=255) aaTACCTGTCAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGa > 1:3067600/1‑55 (MQ=255) | AGATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGAAA > W3110S.gb/236728‑236868 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |