| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2273885 = | 47 (0.840) | 3 (0.060) | 3/96 | NT | 6.2% | intergenic (+6/‑175) | spr/rtn | predicted peptidase, outer membrane lipoprotein/conserved hypothetical protein |
| ? | W3110S.gb | 2273917 = | 47 (0.890) | intergenic (+38/‑143) | spr/rtn | predicted peptidase, outer membrane lipoprotein/conserved hypothetical protein | |||||
GCATGAATGAACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTT > W3110S.gb/2273815‑2273955 | gCATGAATGAACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAAcc > 1:4807643/1‑71 (MQ=255) cggaaacatcattttctctgatgaatgaaaacaaaaaagcactgcctaagcagtgctttcagttaactCGt > 1:1645421‑M1/69‑71 (MQ=255) atgaatgaACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGt < 1:2858663/71‑1 (MQ=255) atgaatgaACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGt < 1:1858033/71‑1 (MQ=255) atgaatgaACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGt > 1:1177901/1‑71 (MQ=255) aatgaaCCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTg > 1:383860/1‑71 (MQ=255) atgaaCCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTgg < 1:1038337/71‑1 (MQ=255) tgaaCCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGa < 1:1208243/71‑1 (MQ=255) aCCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATg < 1:1578718/70‑1 (MQ=255) cGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCaa < 1:2602147/71‑1 (MQ=255) cTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATcc < 1:4740985/70‑1 (MQ=255) aagCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTa < 1:2529810/71‑1 (MQ=255) agCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTAt < 1:2658105/71‑1 (MQ=255) cGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATcc < 1:4093298/71‑1 (MQ=255) gTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCt < 1:1349566/71‑1 (MQ=255) ttACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCt < 1:4570728/60‑1 (MQ=255) ttACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTg < 1:2992980/71‑1 (MQ=255) aaacaaaaaagcactgcctaagcagtgctttcagttaactCGTTTGGATGCAATCCCTTGGCTa > 1:2042976‑M1/41‑64 (MQ=255) aCAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGAc > 1:4559870/1‑71 (MQ=255) aCAACGAAGCACGCCGGGTTCTCAGCAGCAGCTAATAAACCGTTTGGAt > 1:708585/1‑49 (MQ=255) cAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGAc < 1:1260483/70‑1 (MQ=255) cGAGGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGt > 1:5007927/1‑71 (MQ=255) cGAAGCACGCCGGGTTCTCGGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGt > 1:4975855/1‑71 (MQ=255) cGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGa < 1:1354924/66‑1 (MQ=255) gAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGtt < 1:3292307/71‑1 (MQ=255) gAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGtt < 1:509965/71‑1 (MQ=255) aaaagcactgcctaagcagtgctttcagttaactCGTTTGGATGCAATCCCTTGGCTATcc > 1:1205897‑M1/35‑61 (MQ=255) cACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCt < 1:5178595/54‑1 (MQ=255) cGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGc < 1:400442/40‑1 (MQ=255) cGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGa < 1:293272/71‑1 (MQ=255) gCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGa > 1:2325932/1‑70 (MQ=255) ccGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTg < 1:4650522/56‑1 (MQ=255) ccGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTaa > 1:1417625/1‑65 (MQ=255) gggTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTa < 1:2094520/49‑1 (MQ=255) gTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAAt > 1:454456/1‑37 (MQ=255) gTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCAc < 1:4086552/71‑1 (MQ=255) gTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCAc < 1:1842583/71‑1 (MQ=255) tctcAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTg < 1:2157446/50‑1 (MQ=255) aagcagtgctttcagttaactCGTTTGGATGCAATCCCTTGGCTATCCTGa > 1:3159909‑M1/22‑51 (MQ=255) ctcAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTg > 1:1268870/1‑40 (MQ=255) ctcAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTg > 1:316958/1‑40 (MQ=255) ctcAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGc > 1:3480532/1‑71 (MQ=255) tcAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTa < 1:3067126/43‑1 (MQ=255) tcAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCt > 1:4568602/1‑71 (MQ=255) aGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAAc > 1:2419148/1‑56 (MQ=255) aGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCt > 1:5069925/1‑69 (MQ=255) ccGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGAc > 1:3295278/1‑46 (MQ=255) ccGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAg > 1:4414484/1‑70 (MQ=255) gCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCa < 1:993224/71‑1 (MQ=255) aGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGt > 1:5003942/1‑71 (MQ=255) cTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGa < 1:363163/39‑1 (MQ=255) aataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACt > 1:1332497/1‑47 (MQ=255) aataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCtt > 1:2421391/1‑71 (MQ=255) ataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCa < 1:786612/53‑1 (MQ=255) ataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCttt > 1:2905738/1‑71 (MQ=255) aaCCGTTTGGATTCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCa > 1:1413747/1‑50 (MQ=255) aaCCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCttttt > 1:3255451/1‑70 (MQ=255) aCCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTg > 1:2140911/1‑71 (MQ=255) aCCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTg < 1:1401393/71‑1 (MQ=255) aCCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTg < 1:2648039/71‑1 (MQ=255) aCCGTTTGGATGCAATCCCTTGGCTATCCTGACGACTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTg > 1:1345080/1‑71 (MQ=255) ccGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCa > 1:1401612/1‑59 (MQ=255) CGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGtt < 1:3749620‑M1/71‑1 (MQ=255) | GCATGAATGAACCGTACTGGAAGAAGCGTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTT > W3110S.gb/2273815‑2273955 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |