| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2751068 = | 58 (1.030) | 3 (0.060) | 3/92 | NT | 5.7% | coding (618/1662 nt) | recN | recombination and repair protein |
| ? | W3110S.gb | 2751097 = | 47 (0.930) | coding (647/1662 nt) | recN | recombination and repair protein | |||||
GCGCCGCCCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAG > W3110S.gb/2750998‑2751134 | gcgcCGCCCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGagag > 1:1088542/1‑71 (MQ=255)gcgcCGCCCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGagag < 1:4230577/71‑1 (MQ=255) cgccgcCCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGt < 1:4978021/71‑1 (MQ=255) cgccCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGttt > 1:2158766/1‑70 (MQ=255) cgccCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGttt > 1:2965666/1‑70 (MQ=255) cgccCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTg < 1:3035674/71‑1 (MQ=255) cgccCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTg < 1:2223930/71‑1 (MQ=255) caccgtcggccattaatgccaatgcattctggctggtggtcagcaattgaccgctgttcgccagacGt > 1:3523608‑M1/67‑68 (MQ=255) accgtcggccattaatgccaatgcattctggctggtggtcagcaattgaccgctgttcgccagacGTTTg > 1:5138904‑M1/66‑70 (MQ=255) accgtcggccattaatgccaatgcattctggctggtggtcagcaattgaccgctgttcgccagacGTTTg > 1:4782434‑M1/66‑70 (MQ=255) accgtcggccattaatgccaatgcattctggctggtggtcagcaattgaccgctgttcgccagacGTTTg < 1:1185929‑M1/5‑1 (MQ=255) gTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACa > 1:2927132/1‑70 (MQ=255) cGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAAt > 1:2755267/1‑70 (MQ=255) cGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATc > 1:4053723/1‑71 (MQ=255) ggAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATcg < 1:829993/71‑1 (MQ=255) ggAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATcg < 1:1827300/71‑1 (MQ=255) ccattaatgccaatgcattctggctggtggtcagcaattgaccgctgttcgccagacGtt > 1:3500892‑M1/58‑60 (MQ=255) ccattaatgccaatgcattctggctggtggtcagcaattgaccgctgttcgccagacGtt > 1:386662‑M1/58‑60 (MQ=255) aaCTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCGGGAGAGTTTGAACAAATcgac > 1:4719782/1‑71 (MQ=255) aaCTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATcgac < 1:4470951/71‑1 (MQ=255) tgccaatgcattctggctggtggtcagcaattgaccgctgttcgccagacGTTTGAACAAATCGACGAaga > 1:4290081‑M1/51‑71 (MQ=255) ctgcAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGaa > 1:3979086/1‑69 (MQ=255) ctgcAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGaa > 1:4848553/1‑69 (MQ=255) ctgcAATACCAATCAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGaa > 1:2782675/1‑69 (MQ=255) tgcAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTg < 1:414387/54‑1 (MQ=255) tgcAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGTCGAagag > 1:5515/1‑71 (MQ=255) gcAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAagag > 1:3835913/1‑70 (MQ=255) cAATACCAATTAAAAGAACTTTACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAagag < 1:1877398/69‑1 (MQ=255) cAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAagag < 1:3629715/69‑1 (MQ=255) cAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTa > 1:2332589/1‑71 (MQ=255) cAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTa > 1:4430389/1‑71 (MQ=255) cAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTa > 1:4424222/1‑71 (MQ=255) cAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTa > 1:2923524/1‑71 (MQ=255) aTACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAAc < 1:1956339/53‑1 (MQ=255) aTACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTAc > 1:4510704/1‑70 (MQ=255) aTACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACa < 1:4240493/71‑1 (MQ=255) aTACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACa < 1:3251907/71‑1 (MQ=255) ccAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATcgacga > 1:3238615/1‑60 (MQ=255) ccAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAAc < 1:3568537/71‑1 (MQ=255) cattctggctggtggtcagcaattgaccgctgttcgccagacGTTTGAACAAATCGACGAAGAGTACaaa > 1:1963782‑M1/43‑70 (MQ=255) cAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGt < 1:5113327/43‑1 (MQ=255) cAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTa < 1:2554303/65‑1 (MQ=255) ttctggctggtggtcagcaattgaccgctgttcgccagacGTTTg > 1:4537319‑M1/41‑45 (MQ=255) ttctggctggtggtcagcaattgaccgctgttcgccagacGTTTGAACAAATCGACGAAGAGTACAAACGt > 1:3897762‑M1/41‑71 (MQ=255) aTTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTc < 1:3772642/71‑1 (MQ=255) ttAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCt < 1:2164271/71‑1 (MQ=255) tAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTg > 1:1584873/1‑71 (MQ=255) tAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTg > 1:125896/1‑71 (MQ=255) aaaGAACTTAACGAATTTAATCCTCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTgg < 1:1190036/70‑1 (MQ=255) aaaGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTgg > 1:1461335/1‑70 (MQ=255) aaGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGc > 1:4354312/1‑70 (MQ=255) aaGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCg < 1:2094549/71‑1 (MQ=255) aGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCg > 1:3636479/1‑70 (MQ=255) ttAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGt < 1:942275/59‑1 (MQ=255) aaCGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACATCg < 1:1596294/70‑1 (MQ=255) aaCGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCgg > 1:1476141/1‑71 (MQ=255) aaCGAATTTAATCCGCAGCCCGGAGAGTCTGAACAAATCGACGAAGAGTACAAACGTCTGGc > 1:2598716/1‑62 (MQ=255) aaTTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCaa > 1:2082788/1‑71 (MQ=255) aaTTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCaa < 1:4442093/71‑1 (MQ=255) aTTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTTGCGAACAGCGGTCAAt > 1:4549591/1‑71 (MQ=255) tAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAg > 1:2185172/1‑60 (MQ=255) aaTCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCt > 1:110989/1‑71 (MQ=255) aTCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCt < 1:2813041/70‑1 (MQ=255) aTCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTg < 1:2139688/71‑1 (MQ=255) tCCGCAGCCCGGAGAGTTTGAACAAATCGACGAagag > 1:1817618/1‑37 (MQ=255) tCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGa > 1:761598/1‑71 (MQ=255) tCCGCAGCCCGGAGAGTTTGAACAAATAGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGa > 1:3315276/1‑71 (MQ=255) ccGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACa < 1:2824033/40‑1 (MQ=255) ccGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCt < 1:2844446/68‑1 (MQ=255) cGCAGCCCGGAGAGTTTGAACAAATCTACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGac > 1:4070426/1‑70 (MQ=255) cGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGac < 1:904662/70‑1 (MQ=255) cAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGaccac > 1:2064013/1‑71 (MQ=255) aGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGaccac > 1:2107236/1‑70 (MQ=255) gCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGaccac > 1:2978475/1‑69 (MQ=255) gCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGAccacca < 1:1895300/71‑1 (MQ=255) cccGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTg < 1:4194746/60‑1 (MQ=255) cGGAGAGTTTGAACAAATCGACGAAGAGTACAAAAGTCTGGCGAACAGCGGTCAATTGCTGACCAccag > 1:4598199/1‑69 (MQ=255) gagaGTATGAACAAATCGACGAAGAGTACAAACGTCTGGCGaa > 1:1584521/1‑43 (MQ=255) agagTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCGccagccag > 1:280632/1‑70 (MQ=255) gagTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAAt > 1:4524542/1‑52 (MQ=255) | GCGCCGCCCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAG > W3110S.gb/2750998‑2751134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |