| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3008847 = | 62 (1.100) | 4 (0.080) | 3/94 | NT | 6.8% | coding (164/1386 nt) | hyuA | D‑stereospecific phenylhydantoinase |
| ? | W3110S.gb | 3008865 = | 52 (1.000) | coding (182/1386 nt) | hyuA | D‑stereospecific phenylhydantoinase | |||||
GCAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGATTTTTTTACCGG > W3110S.gb/3008778‑3008916 | gCAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTggcggc < 1:5104642/71‑1 (MQ=255)acgcagctgcgcgggtaccggtaaaaaaatcatcacaactgcgcgcgatgccgacatcaatattgaaatGc < 1:4058588‑M1/2‑1 (MQ=255) aacaaTATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGt > 1:3518143/1‑71 (MQ=255) acaaTATTTCGCCGCAGGTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCACTGGCGGCGTg < 1:947702/71‑1 (MQ=255) acaaTATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTg < 1:4768301/71‑1 (MQ=255) caaTATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTg > 1:3697746/1‑70 (MQ=255) caaTATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTg > 1:3643514/1‑70 (MQ=255) aaTATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTggcggc < 1:4035471/66‑1 (MQ=255) tttCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGt < 1:350189/70‑1 (MQ=255) tttCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGt < 1:1983114/70‑1 (MQ=255) tttCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGt < 1:3142651/70‑1 (MQ=255) tCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTg > 1:1729164/1‑63 (MQ=255) gggtaccggtaaaaaaatcatcacaactgcgcgcgatgccgacatcaatattgaaatGCGTGGATGTCCa < 1:1255318‑M1/13‑1 (MQ=255) ccgcAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATAc < 1:824102/71‑1 (MQ=255) cAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCa > 1:3247191/1‑71 (MQ=255) cggtaaaaaaatcatcacaactgcgcgcgatgccgacatcaatattgaaatGCGTGGATGTCCATACGCAt > 1:4705293‑M1/52‑71 (MQ=255) cccGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTc > 1:3335604/1‑70 (MQ=255) aaaaaaatcatcacaactgcgcgcgatgccgacatcaatattgaaatGCGt > 1:1810228‑M1/48‑51 (MQ=255) ccGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCa > 1:3657138/1‑70 (MQ=255) aaaaaatcatcacaactgcgcgcgatgccgacatcaatattgaaatGCGTGGATGTCCATACGc > 1:2626954‑M1/47‑64 (MQ=255) aaaaaatcatcacaactgcgcgcgatgccgacatcaatattgaaatGCGTGGATGTCCATACGc > 1:1017275‑M1/47‑64 (MQ=255) cGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTg < 1:2532137/50‑1 (MQ=255) aaaaatcatcacaactgcgcgcgatgccgacatcaatattgaaatg > 1:4241282‑M1/46‑46 (MQ=255) gTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAata < 1:4876302/71‑1 (MQ=255) gTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTACCTGGCGGCGTGGa > 1:5158367/1‑51 (MQ=255) aTGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGa > 1:2544005/1‑49 (MQ=255) gaagaaATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGa > 1:1341328/1‑71 (MQ=255) agaaATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATg > 1:2080281/1‑71 (MQ=255) agaaATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATg > 1:5061582/1‑71 (MQ=255) agaaATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATg > 1:4801441/1‑71 (MQ=255) gaaATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCa < 1:215812/56‑1 (MQ=255) gaaATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGt < 1:439426/71‑1 (MQ=255) gaaATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGt < 1:815848/71‑1 (MQ=255) gaaATTGATGCCACTGGCTGTTACGTTTTCCCTGGAGGCGTGGATGTCCATACGCATTTCAATATTGATg < 1:2858235/70‑1 (MQ=255) aaaTTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGa > 1:3627542/1‑43 (MQ=255) aaTTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCa > 1:701845/1‑48 (MQ=255) aTTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGAt > 1:2575056/1‑42 (MQ=255) tGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCAt > 1:1043978/1‑46 (MQ=255) gATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCAt > 1:4607648/1‑71 (MQ=255) tGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGa > 1:4279002/1‑36 (MQ=255) tGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATc < 1:4484142/70‑1 (MQ=255) gCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCAt < 1:4183186/48‑1 (MQ=255) gCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCgg < 1:748503/65‑1 (MQ=255) gCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATcgc > 1:1767695/1‑71 (MQ=255) aCTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATcgcgcg < 1:788883/71‑1 (MQ=255) aCTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATcgcgcg < 1:3661709/71‑1 (MQ=255) cTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCAt < 1:911786/44‑1 (MQ=255) gCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCAt > 1:4759120/1‑35 (MQ=255) tGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAAAATTGATGTCGGCATCGCGCGCAGTtg > 1:3653613/1‑71 (MQ=255) ttACGTTTTCCCTGGCGGCGTGGATGTCCATACGCAttt < 1:1365434/39‑1 (MQ=255) ttACGTTTTCCCTGGCGGCGTGGATGTCCATACGCAttt < 1:1521406/39‑1 (MQ=255) ttACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTc < 1:1567994/40‑1 (MQ=255) ttACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAatat < 1:4704091/45‑1 (MQ=255) ttACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATAtt < 1:3177726/46‑1 (MQ=255) ttACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCa < 1:1482986/56‑1 (MQ=255) ttACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATc < 1:2071235/58‑1 (MQ=255) ttACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTtgt < 1:4906570/70‑1 (MQ=255) aCGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGt > 1:1566514/1‑49 (MQ=255) aCGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGtgat > 1:2632934/1‑71 (MQ=255) aCGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGtgat > 1:1886490/1‑71 (MQ=255) cGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGtga > 1:3966562/1‑69 (MQ=255) gTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATAtt < 1:333584/42‑1 (MQ=255) ttttCCCTGGCGGCGTGGATGTCCATACGCATTTCaa < 1:587322/37‑1 (MQ=255) tttCCCTGGCGGCGTGGATGTCCATACGCATTTCAatat > 1:3686744/1‑39 (MQ=255) ttCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGa > 1:2050570/1‑41 (MQ=255) ttCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATcg > 1:5156877/1‑52 (MQ=255) ttCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTtgt > 1:261549/1‑63 (MQ=255) ttCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTtgt > 1:4393723/1‑63 (MQ=255) ttCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGAttt > 1:5146862/1‑71 (MQ=255) ttCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGAtt < 1:821683/70‑1 (MQ=255) ttCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGAtt < 1:2744852/70‑1 (MQ=255) tCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGAttt < 1:1900167/70‑1 (MQ=255) cccTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATc > 1:4098337/1‑49 (MQ=255) ccTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGtgatg < 1:4397749/64‑1 (MQ=255) ccTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGtgatg < 1:3447282/64‑1 (MQ=255) ccTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGAtttttt < 1:238624/71‑1 (MQ=255) cTGGCGGCGTGGATGTCCATACGCATTTCAATATTGAt < 1:4530824/38‑1 (MQ=255) cTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGAtttttt > 1:1594448/1‑70 (MQ=255) gcggcgTGGATGTCCATACTCATTTCAATATTGATGTCGGCATCGCGCGCAGTGGTGATGATTTTTTTa < 1:841943/69‑1 (MQ=255) gcggcgTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGAtttttt < 1:5049405/67‑1 (MQ=255) gcggcgTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGATTTTTTTAcc < 1:431000/71‑1 (MQ=255) gcggcgTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGATTTTTTTAcc > 1:1848728/1‑71 (MQ=255) gcggcgTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGATTTTTTTAc > 1:4392178/1‑70 (MQ=255) ggcgTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGATTTTTTTACCgg < 1:1660447/71‑1 (MQ=255) | GCAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGATTTTTTTACCGG > W3110S.gb/3008778‑3008916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |