| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3690778 = | NA (NA) | 4 (0.070) | 4/100 | NT | NA | noncoding (2202/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | W3110S.gb | 3690797 = | NA (NA) | noncoding (2183/2904 nt) | rrlC | 23S ribosomal RNA | |||||
Only 100 of 105 total aligned reads displayed.
TTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTT > W3110S.gb/3690712‑3690846 | tttAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGt > 1:328646/1‑70 (MQ=40) tAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGt < 1:5108083/68‑1 (MQ=40) aggaggAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAg < 1:3208297/70‑1 (MQ=40) ggaggaGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAg < 1:4841113/69‑1 (MQ=40) ggaggaGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGaa < 1:4979958/71‑1 (MQ=39) aCCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCaaa > 1:4265095/1‑71 (MQ=39) ccGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAAc < 1:270289/71‑1 (MQ=39) cGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCAc > 1:1076939/1‑55 (MQ=255) ccccAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACg < 1:4532119/54‑1 (MQ=255) ccAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTa > 1:1244392/1‑70 (MQ=40) cAGTCAAACTACCCACCAGACACTGTCCGCAACCCGTATCACGGGTCCACGTTAGAACATCAAACATTaaa < 1:2005114/71‑1 (MQ=255) cAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACa < 1:763951/59‑1 (MQ=255) cAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACAt > 1:3630633/1‑67 (MQ=40) cAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTa > 1:668957/1‑69 (MQ=40) cAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTa > 1:675199/1‑69 (MQ=40) aGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGGTAGaa > 1:1210906/1‑56 (MQ=255) gTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCa < 1:2740398/47‑1 (MQ=255) gTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAgg > 1:435956/1‑71 (MQ=39) tCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAggg < 1:4958004/71‑1 (MQ=39) cAAACTACCGACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGtt > 1:513585/1‑49 (MQ=255) cAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGt < 1:2007330/48‑1 (MQ=255) cAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAAc > 1:1703846/1‑54 (MQ=255) aaCTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtgg > 1:295309/1‑71 (MQ=39) aaCTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtgg > 1:3743776/1‑71 (MQ=39) aaCTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtgg > 1:5133620/1‑71 (MQ=39) aaCTACCCACCAGACACTGTCCGCAACCCGGATCAAGGGTCCACGTTAGAACATCAAACATTAAAGggtgg > 1:3317358/1‑71 (MQ=255) cTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTa > 1:1613462/1‑71 (MQ=39) aCCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGaa > 1:2612538/1‑47 (MQ=255) aCCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTAtt > 1:2152233/1‑71 (MQ=39) cccACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTAttt > 1:1319840/1‑71 (MQ=39) cccACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTAtt < 1:1041904/70‑1 (MQ=40) caccaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAAc > 1:2617786/1‑45 (MQ=255) caccaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCa < 1:2556817/71‑1 (MQ=39) accaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTc > 1:4658181/1‑69 (MQ=40) ccaGACACTTTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCa < 1:2064361/47‑1 (MQ=255) ccaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAg < 1:3043124/40‑1 (MQ=255) ccaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCa < 1:2777470/47‑1 (MQ=255) ccaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAg < 1:2468088/71‑1 (MQ=39) caGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAgg > 1:4433795/1‑71 (MQ=39) caGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAgg > 1:1129727/1‑71 (MQ=39) caGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAgg < 1:3458895/71‑1 (MQ=39) aGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTaa > 1:4599651/1‑53 (MQ=255) aGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtggt > 1:720025/1‑61 (MQ=255) gACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCa < 1:3467800/66‑1 (MQ=40) gACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTc < 1:844843/71‑1 (MQ=39) gACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTc > 1:2220710/1‑71 (MQ=39) acacTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAggg < 1:2578784/55‑1 (MQ=255) acacTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAgg < 1:1993751/54‑1 (MQ=255) acacTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtgg < 1:798232/58‑1 (MQ=255) acacTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCg < 1:1221807/71‑1 (MQ=39) acTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCaaa > 1:3059574/1‑43 (MQ=255) cTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCt < 1:4760810/71‑1 (MQ=39) tGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTc > 1:2688970/1‑71 (MQ=39) tGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTc > 1:1793775/1‑71 (MQ=39) gTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTaaa > 1:4670388/1‑47 (MQ=255) tCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTcc < 1:415127/70‑1 (MQ=40) tCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTc < 1:4971793/69‑1 (MQ=40) cgaaaCCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATg > 1:2637222/4‑71 (MQ=255) cGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCAt < 1:2336589/70‑1 (MQ=40) cGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCAt < 1:2376452/70‑1 (MQ=40) gCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATg > 1:1813305/1‑70 (MQ=40) cAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCaa > 1:1261374/1‑56 (MQ=255) cAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCaa > 1:4112388/1‑56 (MQ=255) cAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCt < 1:1491664/64‑1 (MQ=40) cAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATg > 1:2349844/1‑69 (MQ=40) cAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATg > 1:371522/1‑69 (MQ=40) cAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATg > 1:5144902/1‑69 (MQ=40) cAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCa < 1:1393375/71‑1 (MQ=39) cAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCa < 1:617724/71‑1 (MQ=39) aaCCCGGATCACGGGTCCACGTTAGAACATCAAACATTaaa > 1:1071188/1‑41 (MQ=255) aaCCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGCGGTATTTCAAg > 1:1306165/1‑56 (MQ=255) aCCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGa < 1:2656751/71‑1 (MQ=39) aCCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGa > 1:2878646/1‑71 (MQ=39) cccGGATCACGTGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGAc > 1:4225103/1‑71 (MQ=255) cccGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTAttt > 1:2159021/1‑50 (MQ=255) cccGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGAc < 1:932353/71‑1 (MQ=39) ccGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGt < 1:2429386/55‑1 (MQ=255) cGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTg < 1:1066842/71‑1 (MQ=39) cGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTg > 1:3278996/1‑71 (MQ=39) ggATCACGGTTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTgg < 1:3107977/71‑1 (MQ=255) ggATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTgg > 1:4104839/1‑71 (MQ=39) ggATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTgg > 1:111581/1‑71 (MQ=39) gATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGt > 1:1546938/1‑52 (MQ=255) aTCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTc < 1:1438664/57‑1 (MQ=255) cACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTc > 1:3330954/1‑71 (MQ=35) aCGGGTCCACGTTAGAACATCAAACATTAAAGggtgg < 1:3905003/37‑1 (MQ=40) aCGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTc < 1:4369652/70‑1 (MQ=35) aCGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTc < 1:2593407/70‑1 (MQ=35) aCGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTc < 1:18255/70‑1 (MQ=35) aCGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTc < 1:2064300/70‑1 (MQ=35) cGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCca > 1:452940/1‑71 (MQ=34) gggTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCca > 1:4955580/1‑70 (MQ=35) ggTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCcaca > 1:2239153/1‑71 (MQ=34) gTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCacac < 1:2409486/71‑1 (MQ=34) tCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACt < 1:1403424/71‑1 (MQ=34) ccACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACtt > 1:2202508/1‑71 (MQ=32) cACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCg < 1:2144295/61‑1 (MQ=31) cACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACtt > 1:1280713/1‑70 (MQ=31) cACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACtt < 1:3669684/70‑1 (MQ=31) cACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACtt > 1:3864662/1‑70 (MQ=31) | TTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTT > W3110S.gb/3690712‑3690846 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |