| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4341779 | 57 (1.010) | 3 (0.060) | 3/90 | NT | 5.2% | intergenic (‑68/+69) | adiC/adiY | arginine:agmatin/DNA‑binding transcriptional activator |
| ? | W3110S.gb | = 4341789 | 59 (1.190) | intergenic (‑78/+59) | adiC/adiY | arginine:agmatin/DNA‑binding transcriptional activator | |||||
Only 100 of 104 total aligned reads displayed.
AATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTAAAAAT > W3110S.gb/4341712‑4341848 | aaTTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGtt > 1:5176584/1‑71 (MQ=255)aaTTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGtt > 1:5182123/1‑71 (MQ=255) aTTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTg < 1:1709991/71‑1 (MQ=255) aTTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTg < 1:2229035/71‑1 (MQ=255) aaaCTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAat > 1:275641/1‑71 (MQ=255) aCTCCTGCGAAGGCGAGCTTCGTGACAATAAATTATGTCATATCATACGCCTGCATTCGATAGTTGAatta < 1:1270120/71‑1 (MQ=255) aCTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAatta < 1:2979699/71‑1 (MQ=255) ccTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATta < 1:413219‑M2/71‑3 (MQ=255) cTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATtat < 1:2811130‑M2/71‑4 (MQ=255) cTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATtat < 1:4846774‑M2/71‑4 (MQ=255) cTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATtat < 1:1639742‑M2/71‑4 (MQ=255) cTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATt > 1:1873781‑M2/1‑68 (MQ=255) cTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATt > 1:1626263‑M2/1‑68 (MQ=255) tGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATtatc < 1:1966281‑M2/71‑5 (MQ=255) tGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATt > 1:353980‑M2/1‑67 (MQ=255) tGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATt > 1:627242‑M2/1‑67 (MQ=255) gagAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAg < 1:3607573/55‑1 (MQ=255) cGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAataattcaactatcga < 1:3619761‑M1/71‑17 (MQ=255) gAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAat > 1:2643072/1‑61 (MQ=255) gAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATtatcga > 1:3597949‑M2/1‑64 (MQ=255) agccGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCg < 1:2370349/68‑1 (MQ=255) agccGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCg < 1:2376471/68‑1 (MQ=255) ggCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAatt > 1:5162431/1‑59 (MQ=255) gCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATtatcga < 1:388883‑M2/66‑7 (MQ=255) cGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGt < 1:4871288/71‑1 (MQ=255) gAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGaa > 1:131682/1‑54 (MQ=255) gAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGt > 1:4606391/1‑70 (MQ=255) gCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGATTTATTATCGACCGGGTTAt > 1:1990479/1‑71 (MQ=255) gCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTAt > 1:5179385/1‑71 (MQ=255) ttCGTGACAATAAATTACGACATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGtt < 1:858019/67‑1 (MQ=255) cGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTTAATTATTATCGACCGGGTTATCg < 1:3101039/69‑1 (MQ=255) gTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAat > 1:778848/1‑48 (MQ=255) tGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAACTATTATCGACCGGGTTATCGCTGa < 1:2360952/71‑1 (MQ=255) aCAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATc > 1:966317/1‑64 (MQ=255) aCAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGAt < 1:3940998/70‑1 (MQ=255) cAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGc < 1:1730483/71‑1 (MQ=255) cAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGc > 1:4966512/1‑71 (MQ=255) aaTAAATTACGTCATATCATACGCCTGCATTCGATAg < 1:1121229/37‑1 (MQ=255) aaTAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATtat > 1:4670803‑M2/1‑46 (MQ=255) aaTAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGa < 1:1823315/67‑1 (MQ=255) aaTAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGa < 1:1678354/67‑1 (MQ=255) aTAAATTACGTCATATCATACGCCTGCATTCGATAataattcaactatc < 1:2018537‑M1/49‑15 (MQ=255) tAAATTACGTCATATCATACGCCTGCATTCGATATTTGAatta > 1:4553118/1‑43 (MQ=255) tAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGa > 1:2145737/1‑65 (MQ=255) tAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATg > 1:1875758/1‑67 (MQ=255) tAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGt > 1:3644148/1‑71 (MQ=255) tAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGt > 1:1323003/1‑71 (MQ=255) aaaTTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGt > 1:3827424/1‑70 (MQ=255) aaTTACGTCATATCATACGCCTGCATTCGATAataattcaacta < 1:1586431‑M1/44‑13 (MQ=255) ttACGTCATATCATACGCCTGCATTCGATAGTTGAATTATtatc > 1:2306549‑M2/1‑40 (MQ=255) tACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGtta > 1:11531/1‑68 (MQ=255) tACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGtta > 1:3652579/1‑68 (MQ=255) cggcatatcataCGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTaa < 1:645478/67‑1 (MQ=255) tcatatcataCGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAata > 1:1455656/1‑70 (MQ=255) atatcataCGCCTGCATTCGATAGTTGAATTATTATCGAcc < 1:798295/41‑1 (MQ=255) atatcataCGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGt < 1:2515356/60‑1 (MQ=255) tatcataCGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCg < 1:932170/58‑1 (MQ=255) tcataCGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGctc > 1:2837407/1‑71 (MQ=255) tcataCGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGctc > 1:4505928/1‑71 (MQ=255) cataCGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGctct > 1:5070370/1‑71 (MQ=255) ataCGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTAt < 1:1068588/43‑1 (MQ=255) cGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGt > 1:4291420/1‑71 (MQ=255) gCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATc < 1:1122656/40‑1 (MQ=255) ccTGCATTCGATAGTTGAATTATTATCGACCGGGt > 1:1895510/1‑35 (MQ=255) ccTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGa > 1:4953760/1‑44 (MQ=255) ccTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTa < 1:2363467/71‑1 (MQ=255) cTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGt > 1:4686606/1‑68 (MQ=255) cTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTaa < 1:2523765/71‑1 (MQ=255) tGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTa < 1:1351724/69‑1 (MQ=255) tGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAg > 1:3500468/1‑71 (MQ=255) gCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAgg > 1:2568477/1‑71 (MQ=255) cATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGa > 1:3490501/1‑40 (MQ=255) cATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAata > 1:3001193/1‑54 (MQ=255) cATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAgg < 1:1547846/70‑1 (MQ=255) ttCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGttatta < 1:1362789/49‑1 (MQ=255) ttCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCg > 1:2781052/1‑62 (MQ=255) tCGATAataattcaactatcgaatgcaggcgtatgatatgacgtaatttattgtcacgaagctcgccttc > 1:3597949‑M1/1‑6 (MQ=255) tCGATAataattcaactatcgaatgcaggcgtatgatatgacgtaatttattgtcacgaagctcgc < 1:388883‑M1/66‑61 (MQ=255) tCGATAGTTGAATTATtatcgaatgcaggcgtatgatatgacgtaatttattgtcacgaagctcgccttcg < 1:3619761‑M2/71‑56 (MQ=255) cGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTaa > 1:848099/1‑70 (MQ=255) cGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTaa > 1:4763595/1‑70 (MQ=255) gATAataattcaactatcgaatgcaggcgtatgatatgacgtaa > 1:2306549‑M1/1‑4 (MQ=255) gATAGTTGAATTATtatcgaatgcaggcgtatgatatgacgtaatttat < 1:2018537‑M2/49‑36 (MQ=255) gATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTaa > 1:2698752/1‑47 (MQ=255) gATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTaa > 1:400088/1‑47 (MQ=255) gATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTaaaa < 1:902263/71‑1 (MQ=255) gATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTaaaa < 1:3413336/71‑1 (MQ=255) gATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTaaa < 1:4166203/70‑1 (MQ=255) ataataattcaactatcgaatgcaggcgtatgatatgacgtaatttattgtcacgaagctcgccttcgcag < 1:4846774‑M1/71‑69 (MQ=255) ataataattcaactatcgaatgcaggcgtatgatatgacgtaatttattgtcacgaagctcgccttcgcag < 1:2811130‑M1/71‑69 (MQ=255) ataataattcaactatcgaatgcaggcgtatgatatgacgtaatttattgtcacgaagctcgccttcgcag < 1:1639742‑M1/71‑69 (MQ=255) ataataattcaactatcgaatgcaggcgtatgatatgacgtaatttatt > 1:4670803‑M1/1‑3 (MQ=255) aTAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTaaaaa < 1:5160492/71‑1 (MQ=255) taataattcaactatcgaatgcaggcgtatgatatgacgtaatttattgtcacgaagctcgccttcgcagg < 1:413219‑M1/71‑70 (MQ=255) tAGTTGAATTATtatcgaatgcaggcgtatgatatgacgtaatt < 1:1586431‑M2/44‑33 (MQ=255) tAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTAAAAAt < 1:3189607/71‑1 (MQ=255) aataattcaactatcgaatgcaggcgtatgatatgacgtaatttattgtcacgaagctcgccttcgcag > 1:1873781‑M1/1‑1 (MQ=255) aataattcaactatcgaatgcaggcgtatgatatgacgtaatttattgtcacgaagctcgccttcgcag > 1:1626263‑M1/1‑1 (MQ=255) aataattcaactatcgaatgcaggcgtatgatatgacgtaatttattgtcacgaagctcgccttcgca > 1:627242‑M1/1‑1 (MQ=255) aataattcaactatcgaatgcaggcgtatgatatgacgtaatttattgtcacgaagctcgccttcgca > 1:353980‑M1/1‑1 (MQ=255) | AATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTAAAAAT > W3110S.gb/4341712‑4341848 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |