| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4547364 = | 25 (0.440) | 9 (0.190) | 9/84 | NT | 26.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 29 (0.630) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
ATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAC > W3110S.gb/4547294‑4547432 | ctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:463207‑M1/1‑1 (MQ=255) ttAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATT < 1:3317564‑M1/71‑1 (MQ=255) tAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG > 1:3903220‑M1/1‑71 (MQ=255) gtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTg < 1:3822670‑M1/3‑1 (MQ=255) tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattt > 1:3592934‑M1/68‑69 (MQ=255) tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt > 1:3065991‑M1/68‑68 (MQ=255) tacactttgttttctaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattt > 1:4804577‑M1/68‑69 (MQ=255) aaaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG < 1:3824063‑M1/70‑1 (MQ=255) aaaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG < 1:2223165‑M1/70‑1 (MQ=255) acactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg < 1:4222335‑M1/5‑1 (MQ=255) aaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGG < 1:291026‑M1/71‑1 (MQ=255) cactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg > 1:3120679‑M1/66‑70 (MQ=255) aagagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGC > 1:2017825‑M1/1‑71 (MQ=255) ctttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGc < 1:3293731‑M1/7‑1 (MQ=255) tttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa < 1:2140320‑M1/9‑1 (MQ=255) agaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA > 1:581550‑M1/1‑70 (MQ=255) tgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa > 1:3849598‑M1/61‑69 (MQ=255) gttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc < 1:437158‑M1/12‑1 (MQ=255) ttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACt < 1:2251474‑M1/13‑1 (MQ=255) agGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:2485813/71‑1 (MQ=255) gTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAT < 1:4640179‑M1/55‑1 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCa < 1:283782/71‑1 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCa > 1:2192099/1‑70 (MQ=255) tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTg < 1:1505195/65‑1 (MQ=255) aacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCata < 1:2164464‑M1/20‑1 (MQ=255) acgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:3003091‑M1/1‑1 (MQ=255) ttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagag > 1:788600‑M1/1‑56 (MQ=255) ttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCa > 1:2561750/1‑70 (MQ=255) tAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGG > 1:5055658‑M1/1‑50 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG < 1:3371056‑M1/48‑1 (MQ=255) aCTTATTGATAATAAAGTTAAAAAAACATATAAATACAAGACAATTGG > 1:1484546‑M1/1‑48 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacattt < 1:4733847‑M1/2‑1 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa < 1:4049279‑M1/27‑1 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat > 1:136818/1‑64 (MQ=255) gactgccaacactgcacagttttcccccaaaagatgaaacatTTgg > 1:1160244‑M1/43‑46 (MQ=255) tATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaat > 1:1829972/1‑69 (MQ=255) tATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaat > 1:3853836/1‑69 (MQ=255) ttGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg < 1:373664/70‑1 (MQ=255) ccaacactgcacagttttcccccaaaagatgaaacatTTg > 1:1264670‑M1/38‑40 (MQ=255) ccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGtt > 1:1487260‑M1/38‑70 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcg < 1:487599‑M1/71‑28 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACg > 1:1357139/1‑71 (MQ=255) aacactgcacagttttcccccaaaagatgaaacatTTgg < 1:790094‑M1/4‑1 (MQ=255) cactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa < 1:588127‑M1/38‑1 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataa < 1:1232066/59‑1 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTG < 1:1762513‑M1/36‑1 (MQ=255) taaAGTTAAAAAAACAAATAAATACAAGACAATTGGG > 1:1516998‑M1/1‑37 (MQ=255) taaAGTTAAAAAAACAAATAAATACAAGACAATTGGG > 1:3888435‑M1/1‑37 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGG > 1:2902297‑M1/1‑36 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGG > 1:5078762‑M1/1‑35 (MQ=255) cacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt > 1:3757778‑M1/29‑70 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct > 1:3284805/1‑71 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct > 1:2079889/1‑71 (MQ=255) gttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc > 1:4242861‑M1/25‑71 (MQ=255) aaaaaaCAAATAAATACAAGACATTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttt < 1:3153918‑M1/71‑39 (MQ=255) aaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc > 1:4506091/1‑46 (MQ=255) aaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGtt > 1:3684899/1‑57 (MQ=255) aaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaa > 1:274914‑M1/1‑32 (MQ=255) aaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCa < 1:4671122/71‑1 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttttt > 1:138722‑M1/1‑31 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGtt < 1:4970337/51‑1 (MQ=255) ccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATa < 1:3203784‑M1/54‑1 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa > 1:736563‑M1/16‑71 (MQ=255) ataaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttat > 1:728373‑M1/1‑24 (MQ=255) ataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTa > 1:1044995/1‑49 (MQ=255) ataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaa > 1:4257666/1‑70 (MQ=255) aaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa < 1:3848677‑M1/58‑1 (MQ=255) aataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttg < 1:4466977‑M1/71‑51 (MQ=255) aataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttg < 1:2936500‑M1/71‑51 (MQ=255) ataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttg > 1:511606‑M1/1‑20 (MQ=255) ataCAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:4567936/40‑1 (MQ=255) ataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAata > 1:5159507/1‑71 (MQ=255) taCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 1:4436367/1‑71 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg > 1:1010607/1‑40 (MQ=255) aaGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa < 1:2350504/71‑1 (MQ=255) aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaa < 1:3920460/71‑1 (MQ=255) gACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt > 1:1743129/1‑44 (MQ=255) aacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc < 1:794110‑M1/45‑1 (MQ=255) acatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa < 1:3520783‑M1/66‑1 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaa < 1:3722901/71‑1 (MQ=255) cAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa < 1:4975465/71‑1 (MQ=255) cAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa > 1:1104415/1‑71 (MQ=255) atTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc < 1:311641‑M1/69‑1 (MQ=255) | ATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAC > W3110S.gb/4547294‑4547432 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |