New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | W3110S.gb | = 274373 | NA (NA) | 61 (1.080) | 32/102 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin |
Only 100 of 140 total aligned reads displayed.
ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTG > W3110S.gb/575930‑576065 | atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:4247268‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:3656762‑M2/1‑1 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2671098‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2676344‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:3561515‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:292151‑M2/1‑1 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:597092‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1334843‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:5047399‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1785328‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:3386035‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:4436633‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:521189‑M2/71‑71 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacttgatctcatatcagggacttgtacgcaccttcctt < 1:1870181‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:4018154‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2468427‑M2/70‑70 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:655876‑M2/70‑70 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:4186989‑M2/70‑70 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:4803037‑M2/70‑70 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt > 1:3236338‑M2/69‑70 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:3015749‑M2/69‑69 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2843845‑M2/69‑69 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:123001‑M2/1‑1 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:2325853‑M2/1‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:2829321‑M2/3‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:3240145‑M2/4‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:2515076‑M2/4‑1 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:2388379‑M2/67‑70 (MQ=255) gaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:2252167‑M2/66‑71 (MQ=255) gaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:353983‑M2/66‑71 (MQ=255) aaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTAc > 1:3907871‑M2/65‑71 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:3824695‑M2/1‑1 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:3301833‑M2/8‑1 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:4869555‑M2/8‑1 (MQ=255) cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2446281‑M2/2‑1 (MQ=255) cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGa > 1:1883602‑M2/62‑71 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGAt < 1:2392396‑M2/11‑1 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2749323‑M2/2‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:3777241‑M2/2‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:2718833‑M2/3‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:675007‑M2/8‑1 (MQ=255) tctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:260272‑M2/1‑1 (MQ=255) tctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGt > 1:3441111‑M2/57‑61 (MQ=255) ctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1097565‑M2/2‑1 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTa < 1:2270458‑M2/18‑1 (MQ=255) gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:2217007‑M2/51‑71 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1648785‑M2/2‑1 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:1632994‑M2/8‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:3367715‑M2/25‑1 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:4551341‑M2/46‑51 (MQ=255) atgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAt > 1:692101‑M2/44‑71 (MQ=255) tgacaaacatgatctcatatcagggacttgttcgcaccttcctt > 1:3527469‑M2/43‑44 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttcct < 1:2139511‑M2/1‑1 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttcct < 1:4822889‑M2/1‑1 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttcctt > 1:570116‑M2/40‑41 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGcc < 1:443282‑M2/32‑1 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:2430330‑M2/31‑1 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1868308‑M2/2‑1 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa < 1:2391127‑M2/27‑1 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaa < 1:312725‑M2/26‑1 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttccTTAGt > 1:2996599‑M2/38‑42 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:3661124‑M2/31‑1 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAg > 1:407485‑M2/37‑40 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAg > 1:1096479‑M2/37‑40 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAg > 1:3804312‑M2/37‑40 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAg > 1:359447‑M2/37‑51 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACt > 1:4783694‑M2/37‑71 (MQ=255) acatgatctcatatcagggacttgttcgcacattcctt > 1:1470457‑M2/37‑38 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTAg > 1:913138‑M2/36‑39 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTAg > 1:128188‑M2/36‑39 (MQ=255) tgatctcatatcagggacttgttcgcaccttccTTAg > 1:5101862‑M2/34‑37 (MQ=255) tgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGt > 1:525708‑M2/34‑70 (MQ=255) tgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGt > 1:209709‑M2/34‑70 (MQ=255) gatctcatatcagggacttgttcgcagcttccTTAGTACt < 1:3783855‑M2/8‑1 (MQ=255) tctcatatcagggacttgttcgcaccttccTTAGTACTGATGGAGCTACAGCAGAAATTGCCACTGTTAAt > 1:2367194‑M2/31‑71 (MQ=255) catatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttt > 1:4204125‑M2/28‑71 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAttttt > 1:4066985‑M2/27‑71 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttt < 1:4958747‑M2/44‑1 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAg > 1:2545856‑M2/24‑38 (MQ=255) cagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaa < 1:3316801‑M2/26‑1 (MQ=255) ggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAttt < 1:637240‑M2/43‑1 (MQ=255) ttgttcgcaccttccTTAGTACTGATGCATCTACAGCAGAAAt < 1:2173351‑M2/28‑1 (MQ=255) ttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAt < 1:4461759‑M2/28‑1 (MQ=255) ttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAt < 1:3733079‑M2/28‑1 (MQ=255) ttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCAc > 1:396080‑M2/16‑49 (MQ=255) ttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGc > 1:1192907‑M2/16‑71 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGccc > 1:579901‑M2/14‑71 (MQ=255) ttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTa < 1:3280619‑M2/39‑1 (MQ=255) ttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTa < 1:1564428‑M2/39‑1 (MQ=255) ttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtt < 1:764613‑M2/42‑1 (MQ=255) caccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCttttt < 1:4144397‑M2/63‑1 (MQ=255) caccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCttttt > 1:631312‑M2/9‑71 (MQ=255) accttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttttt > 1:131461‑M2/8‑71 (MQ=255) accttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttttt > 1:1706945‑M2/8‑71 (MQ=255) ttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACt < 1:1069072‑M2/35‑1 (MQ=255) ttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGc > 1:5076005‑M2/5‑60 (MQ=255) ttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCttttttt > 1:4238400‑M2/5‑69 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttt < 1:4653299‑M2/44‑1 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtt > 1:1983479‑M2/4‑45 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTg < 1:1286477‑M2/66‑1 (MQ=255) | ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTG > W3110S.gb/575930‑576065 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |