| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 578470 | 49 (0.870) | 5 (0.100) | 5/94 | NT | 9.8% | coding (348/411 nt) | ybcV | hypothetical protein |
| ? | W3110S.gb | = 578482 | 47 (0.910) | coding (336/411 nt) | ybcV | hypothetical protein | |||||
TGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCTTTAGCAAGATTTTCCCTGTATT > W3110S.gb/578413‑578549 | tGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATc > 1:2002738‑M2/1‑70 (MQ=255) gAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATctt > 1:4472950‑M2/1‑68 (MQ=255) gAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATct > 1:2284741‑M2/1‑68 (MQ=255) aaaGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATcttt > 1:2533512‑M2/1‑67 (MQ=255) aaaGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATctt > 1:4979786‑M2/1‑67 (MQ=255) aaaGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATctt > 1:2381428‑M2/1‑67 (MQ=255) aaGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCtttt < 1:3552646/71‑1 (MQ=255) aGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTa > 1:3812036/1‑71 (MQ=255) aGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTa < 1:5103465/71‑1 (MQ=255) aGATTTGTGTAGTGTTCTGAATCCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTa > 1:691985/1‑71 (MQ=255) gATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTAt > 1:5157116/1‑71 (MQ=255) aTTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATg > 1:633260/1‑71 (MQ=255) aTTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATg < 1:1293212/71‑1 (MQ=255) ttGTGTAGTGTTATGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGtt > 1:4671250/1‑71 (MQ=255) gtgtAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGtt > 1:153683/1‑69 (MQ=255) tgtAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCg < 1:1730047/70‑1 (MQ=255) aGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGa > 1:3031804/1‑71 (MQ=255) gtgtTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGa > 1:1669628/1‑70 (MQ=255) gtgtTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGa < 1:1788642/70‑1 (MQ=255) tgtTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGata > 1:862509/1‑71 (MQ=255) ttCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTc < 1:1926605/62‑1 (MQ=255) ttCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGatat < 1:2828746/70‑1 (MQ=255) ttCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATAtt < 1:2010882/71‑1 (MQ=255) tCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATAttt > 1:1953952/1‑71 (MQ=255) cTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTg > 1:287216/1‑71 (MQ=255) aaTGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGt < 1:3093074/69‑1 (MQ=255) aaTGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGt < 1:3335098/69‑1 (MQ=255) aTGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAAt > 1:1866426/1‑71 (MQ=40) tGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATc > 1:4955535/1‑71 (MQ=255) aGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGtt > 1:3952482/1‑47 (MQ=38) aGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGa < 1:2667931/71‑1 (MQ=255) aGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTATTATGtt > 1:3332847/1‑47 (MQ=255) gTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGtt < 1:234246/46‑1 (MQ=38) gTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGa < 1:1298485/70‑1 (MQ=255) tAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATAtt < 1:2295945/55‑1 (MQ=35) aaaTAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCAt > 1:2698005/1‑64 (MQ=255) aaTAGTAATGAATTATCAAAGGTATAGTAATATcttt < 1:4203459‑M2/37‑5 (MQ=255) aaTAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGaaaa > 1:367327/1‑70 (MQ=255) aaTAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAAc < 1:2602845/71‑1 (MQ=255) aaTAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAAc > 1:1357070/1‑71 (MQ=255) aTAGTAATGAATTATCAAAGGTATAGTAATATctt > 1:3898435‑M2/1‑32 (MQ=255) gTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTg < 1:2116464/51‑1 (MQ=35) tAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGaaaa > 1:3219209/1‑65 (MQ=255) tAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTg > 1:206531/1‑71 (MQ=255) aTGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGt > 1:3165283/1‑39 (MQ=40) tGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCtt < 1:2867595/71‑1 (MQ=255) tGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCtt < 1:3187729/71‑1 (MQ=255) tGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCtt < 1:213059/71‑1 (MQ=255) aaTTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGat > 1:3276611/1‑40 (MQ=40) aTTATCAAAGGTATAGTAATATctttgataattcattactatttactgagagcattcagaacact > 1:1012338‑M2/1‑22 (MQ=255) aTTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATAtt < 1:4171872/42‑1 (MQ=38) ttATCAAAGGTATAGTAATATctttgataattcattactatttactgagagcattcagaacactacacaaa < 1:1045295‑M2/71‑51 (MQ=255) ttATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCTTTAg > 1:2136578/1‑70 (MQ=255) tCAAAGGTATAGTAATATctttgataattcattactatttactgagagcattcagaacactacacaaatct > 1:577873‑M2/1‑18 (MQ=255) tCAAAGGTATAGTAATATctttgataattcattactatttactgagagcattcagaacactacacaa > 1:3053389‑M2/1‑18 (MQ=255) tCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCTTTAGCAAg < 1:1938527/71‑1 (MQ=255) cAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGaaaa > 1:1583558/1‑54 (MQ=255) aaGGTATAGTAATATCTTTTATGTTCGTGGATAttt > 1:363950/1‑36 (MQ=40) aaGGTATAGTAATATCTTTTATGTTCGTGGATAttt > 1:622303/1‑36 (MQ=40) aaGGTATAGTAATATCTTTTATGTTCGTGGATAttt > 1:4300341/1‑36 (MQ=40) aaGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCTTTAGCAAGAtt < 1:1573978/71‑1 (MQ=255) aGGTATAGTAATATctttgataattcattactatttactgagagcattcagaacactacacaaatctttc < 1:3527116‑M2/70‑57 (MQ=255) aGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCTTTAGCAAGAttt < 1:1169830/71‑1 (MQ=255) ggTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCTTTAGCAAGAtttt > 1:3733012/1‑71 (MQ=255) gTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCTTTAGCAAGATTTTc < 1:4471724/71‑1 (MQ=255) gTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCTTCAGCAAGATTTTc < 1:2029020/71‑1 (MQ=255) ataGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATAGGAAAACTCCTGCTTTAGCAAGATTTTccc > 1:391822/1‑71 (MQ=255) atatCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCTTTAGCAAGATTTTCCCTGTAtt > 1:1479845/1‑71 (MQ=255) atatCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCTTTAGCAAGATTTTCCCTGTAt < 1:4131574/70‑1 (MQ=255) tatCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGc < 1:2391827/47‑1 (MQ=255) atCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCTTTAg > 1:3161886/1‑51 (MQ=255) tCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCTTTAGCAAGATTTTCCCTGTa < 1:3012863/66‑1 (MQ=255) tCTTTTATGTTCGTGGATATTTGTAATCCACCGGAAAACTCCTGCTTTAGCAAGATTTTCCCTGTa < 1:4974954/66‑1 (MQ=255) | TGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGGTATAGTAATATCTTTTATGTTCGTGGATATTTGTAATCCATCGGAAAACTCCTGCTTTAGCAAGATTTTCCCTGTATT > W3110S.gb/578413‑578549 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |