| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 597762 = | 50 (0.890) | 5 (0.090) | 4/96 | NT | 9.1% | coding (1061/1224 nt) | cusB | copper/silver efflux system, membrane fusion protein |
| ? | W3110S.gb | 597786 = | 53 (1.000) | coding (1085/1224 nt) | cusB | copper/silver efflux system, membrane fusion protein | |||||
GCGGGTGATTACCGTTGATGCCGACGGGCGCTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTCCAGCGGCCTGTTCCT > W3110S.gb/597718‑597852 | gCGGGTGATTACCGTTGATGCCGACGGGCGCTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAg < 1:2328401/71‑1 (MQ=255) cGGGTGATTACCGTTGATGCCGACGGGCGCTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCaa < 1:4257317/69‑1 (MQ=255) gTGATTACCGTTGATGCCGACGGGCGCTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGt < 1:5185363/71‑1 (MQ=255) gTGATTACCGTTGATGCCGACGGGCGCTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGt < 1:714186/71‑1 (MQ=255) gTGATTACCGTTGATGCCGACGGGCGCTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGt < 1:4254522/71‑1 (MQ=255) tccgccagaccagagcgtaatgcggtgacgccttGCGTTGCTGTTTTCCAGGCATCGCaa < 1:1743254‑M1/26‑1 (MQ=255) ccGTTGATGCCGACGGGCGCTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCa < 1:3259341/71‑1 (MQ=255) ccGTTGATGCCGACGGGCGCTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCa < 1:4274798/71‑1 (MQ=255) gTTGATGCCGACGGGCGCTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCAt > 1:3456401/1‑70 (MQ=255) ccGACGGGCGCTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGctc < 1:3817424/70‑1 (MQ=255) ccGACGGGCGCTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGctc < 1:3104778/70‑1 (MQ=255) ccGACGGGCGCTTTGAACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGctc > 1:412485/1‑70 (MQ=255) cGACGGGCGCTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAg < 1:4981002/50‑1 (MQ=255) cGACGGGCGCTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCg < 1:2750349/59‑1 (MQ=255) cGGGCGCTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCtctggtc > 1:2019531/1‑71 (MQ=255) gggCGCTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCtctggtct < 1:3631339/71‑1 (MQ=255) gcTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCg > 1:1745394/1‑71 (MQ=255) gcTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCg > 1:4200828/1‑71 (MQ=255) cTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCg > 1:2206534/1‑70 (MQ=255) cTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCg > 1:5012865/1‑70 (MQ=255) ttGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCgg > 1:92927/1‑69 (MQ=255) tGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGa < 1:4509401/69‑1 (MQ=255) tGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAg > 1:2343886/1‑71 (MQ=255) tGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAg > 1:4064411/1‑71 (MQ=255) gTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAg < 1:502764/70‑1 (MQ=255) ccGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTg > 1:952133/1‑70 (MQ=255) cGAAACGCGTTGCTGTTTTCCATGCATCGCAAGGCGTCACCGCATTAGGCTCTGGTCTGGCGGAAGGTGaa < 1:3986105/71‑1 (MQ=255) cGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTc < 1:5017842/38‑1 (MQ=255) cGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTc < 1:2377037/38‑1 (MQ=255) gAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGt < 1:687980/36‑1 (MQ=255) gAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGaaa < 1:4991877/71‑1 (MQ=255) gAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGaaa < 1:2037082/71‑1 (MQ=255) gAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGaaa < 1:2108957/71‑1 (MQ=255) aaaCGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCAt > 1:3755413/1‑43 (MQ=255) aaaCGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCAt > 1:958642/1‑43 (MQ=255) aaaCGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGaa > 1:4322012/1‑69 (MQ=255) aaCGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGa > 1:837001/1‑61 (MQ=255) ttgcgatgcctggaaaacagcaacgcAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGa < 1:1743254‑M2/34‑1 (MQ=255) aCGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAgg > 1:709482/1‑71 (MQ=255) aCGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAgg < 1:3529592/71‑1 (MQ=255) aCGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAgg < 1:3523730/71‑1 (MQ=255) aCGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAg > 1:1051273/1‑70 (MQ=255) gcgatgcctggaaaacagcaacgcAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAg > 1:3729826‑M2/25‑60 (MQ=255) GCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAgg > 1:3207432‑M1/1‑69 (MQ=255) cgatgcctggaaaacagcaacgcAAGGCGTCACCGCa > 1:4322218‑M2/24‑37 (MQ=255) cgatgcctggaaaacagcaacgcAAGGCGTCACCGCATTACGCtctggtct > 1:3619164‑M2/24‑51 (MQ=255) GTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAggtggt < 1:71276‑M1/71‑1 (MQ=255) GTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAggtggt < 1:590455‑M1/71‑1 (MQ=255) ttGCTGTTTTCCAGGCATCGCAAGTCGTCACCGCATTACGCTCTGGTCTGGCg < 1:3191841/53‑1 (MQ=255) ttGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGtt > 1:4059621/1‑71 (MQ=255) atgcctggaaaacagcaacgcAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGtt < 1:235247‑M2/50‑1 (MQ=255) gCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCtctggtc > 1:5143432/1‑46 (MQ=255) gCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGttt < 1:3458523/70‑1 (MQ=255) tGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTc > 1:2592488/1‑69 (MQ=255) gTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAggtgg > 1:1111007/1‑64 (MQ=255) gTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAg < 1:2826962/60‑1 (MQ=255) gTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTc < 1:3486802/68‑1 (MQ=255) gTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTCCAg > 1:4443792/1‑71 (MQ=255) ttttCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTCCAg < 1:3719260/70‑1 (MQ=255) tttCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTCCAGCg > 1:5154313/1‑71 (MQ=255) ttCCAGGCATCGCAAGGCGTCACCGCATTACGCtctggtc > 1:1406081/1‑40 (MQ=255) ttCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTcc < 1:3684206/66‑1 (MQ=255) ttCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTCCAGCgg > 1:937155/1‑71 (MQ=255) ttCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTCCAGCg < 1:1029937/70‑1 (MQ=255) aGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTCCAGCGGCCTg > 1:1691409/1‑71 (MQ=255) ggCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGtt > 1:979441/1‑58 (MQ=255) ggCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTCCAGCGGCCTGt > 1:4094097/1‑71 (MQ=255) gCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTCCAGCGGCCTGtt > 1:703944/1‑71 (MQ=255) tCGCAAGGTGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTCCAGCGGCCTGTTCCt < 1:573180/71‑1 (MQ=255) tCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTCCAGCGGCCTGt < 1:501841/67‑1 (MQ=255) tCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTCCAGCGGCCTGTTCCt < 1:481719/71‑1 (MQ=255) tCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTCCAGCGGCCTGTTCCt < 1:4807047/71‑1 (MQ=255) cgcAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTCCAGc > 1:4662858‑M2/4‑59 (MQ=255) cgcAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTCCAGCGGCCTGTTCCt > 1:3650878‑M2/4‑70 (MQ=255) gcAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGaa > 1:2640738‑M2/3‑37 (MQ=255) | GCGGGTGATTACCGTTGATGCCGACGGGCGCTTTGTACCGAAACGCGTTGCTGTTTTCCAGGCATCGCAAGGCGTCACCGCATTACGCTCTGGTCTGGCGGAAGGTGAAAAGGTGGTTTCCAGCGGCCTGTTCCT > W3110S.gb/597718‑597852 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |