| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 713954 | 66 (1.170) | 28 (0.500) | 26/102 | NT | 29.2% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | W3110S.gb | 2809398 = | 70 (1.240) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
Only 100 of 124 total aligned reads displayed.
TTATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTT > W3110S.gb/2809328‑2809467 | ttATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATc > 1:1017393/1‑71 (MQ=255)ttATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATc > 1:407159/1‑71 (MQ=255) tatataACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCg > 1:75933/1‑71 (MQ=255) tatataACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCg > 1:4369921/1‑71 (MQ=255) atcgaacacatcatgcagtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaac < 1:632500‑M2/1‑1 (MQ=255) atcgaacacatcatgcagtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCg > 1:741943‑M2/70‑71 (MQ=255) tataACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGc < 1:3736657/71‑1 (MQ=255) gaacacatcatgcagtcgatgcaattcccggcggaattgattgataaggtttgcggaactatctaaCGGCt < 1:272613‑M2/5‑1 (MQ=255) taACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTTTCGTTACTATATc > 1:4822701/1‑66 (MQ=255) taACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTg < 1:891956/71‑1 (MQ=255) cacatcatgcagtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGa < 1:194697‑M2/7‑1 (MQ=255) aCCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGa < 1:1795587/70‑1 (MQ=255) cccACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGaaa > 1:2645598/1‑71 (MQ=255) cccACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGaa < 1:4499658/70‑1 (MQ=255) cacaAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAAtt < 1:663502/71‑1 (MQ=255) atcatgcagtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAAtt < 1:2882199‑M2/11‑1 (MQ=255) caAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTaa < 1:3520/71‑1 (MQ=255) tataaTCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTaa < 1:4425486/67‑1 (MQ=255) aaGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATc > 1:3922739/1‑58 (MQ=255) aaGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGa < 1:365128/64‑1 (MQ=255) aaGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAAt > 1:32566/1‑71 (MQ=255) aaTCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAg < 1:1518149/71‑1 (MQ=255) aaTCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAg < 1:5047413/71‑1 (MQ=255) aaTCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAg < 1:2314783/71‑1 (MQ=255) agtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAgg < 1:1572787‑M2/18‑1 (MQ=255) agtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAgg < 1:37381‑M2/18‑1 (MQ=255) aTCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAgg > 1:2370431/1‑71 (MQ=255) tCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGaaa > 1:2908591/1‑61 (MQ=255) tCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAg > 1:4178390/1‑69 (MQ=255) aTTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAAtt < 1:3268497/61‑1 (MQ=255) aTTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGa > 1:3616851/1‑66 (MQ=255) aTTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGa > 1:1710387/1‑66 (MQ=255) aTTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCa > 1:3436691/1‑71 (MQ=255) tttttCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCa > 1:43036/1‑70 (MQ=255) tttttCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCAt < 1:4831946/71‑1 (MQ=255) ttttCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATa > 1:2104848/1‑71 (MQ=255) tgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATAc > 1:2696850‑M2/48‑71 (MQ=255) gcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAAt < 1:5025185‑M2/10‑1 (MQ=255) attcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCa < 1:643290‑M2/27‑1 (MQ=255) aaaCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCaaa < 1:2569599/70‑1 (MQ=255) aaCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATg > 1:4143260/1‑71 (MQ=255) aCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATg > 1:903191/1‑70 (MQ=255) ggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGa > 1:5176216‑M2/38‑70 (MQ=255) aaTACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTaa < 1:2714583/50‑1 (MQ=255) gcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATa < 1:550044‑M2/35‑1 (MQ=255) aTACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATa < 1:4491778/71‑1 (MQ=255) aCATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTc > 1:3344572/1‑54 (MQ=255) cATTTACTTTATTTGTCACTTTAGTTACTATATCGGCTGa < 1:2505338/40‑1 (MQ=38) cATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGtt < 1:1360696/71‑1 (MQ=255) aattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTc > 1:3815454‑M2/33‑71 (MQ=255) aTTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTc < 1:3047739/71‑1 (MQ=255) aTTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTc < 1:4991419/71‑1 (MQ=255) tttACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAg < 1:1633382/48‑1 (MQ=255) ttgattgagaaggtttgcggaactatctaaCGGCTGAAATTaa < 1:29882‑M2/13‑1 (MQ=255) ttgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGt < 1:3616157‑M2/41‑1 (MQ=255) tgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt > 1:1039461‑M2/30‑71 (MQ=255) tACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGt > 1:577164/1‑48 (MQ=255) tACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt > 1:4497592/1‑71 (MQ=255) gattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt < 1:3607695‑M2/42‑1 (MQ=255) aCTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGa > 1:2270171/1‑44 (MQ=255) aCTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt < 1:2906146/70‑1 (MQ=255) aCTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCAAAATGGATAGTTCGtt > 1:68567/1‑70 (MQ=255) tATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGc > 1:3955521/1‑71 (MQ=255) gagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTa > 1:599834‑M2/25‑68 (MQ=255) gaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCg < 1:4943‑M2/40‑1 (MQ=255) ttGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCa > 1:191108/1‑71 (MQ=255) aaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCa < 1:1156581‑M2/50‑1 (MQ=255) tGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATa > 1:4547835/1‑43 (MQ=255) tGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt > 1:5159675/1‑62 (MQ=255) tGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACg > 1:4337516/1‑66 (MQ=255) aggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt < 1:2386132‑M2/42‑1 (MQ=255) aggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt > 1:5165022‑M2/21‑62 (MQ=255) gtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTg < 1:3416778‑M2/53‑1 (MQ=255) cACTGTCGTTACTATATCGGCTGAAATTAATGAGGt > 1:3987869/1‑36 (MQ=255) tGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATg < 1:4772298/45‑1 (MQ=255) gcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCTCATTGAAc < 1:3213547‑M2/56‑1 (MQ=255) tCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTa > 1:2097621/1‑56 (MQ=255) tCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGTCCATTGAACa < 1:3185487/69‑1 (MQ=255) tCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCAtt > 1:1058097/1‑64 (MQ=255) tCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACaaa > 1:4040042/1‑71 (MQ=255) tCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACa < 1:3304713/69‑1 (MQ=255) ggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACaa < 1:2748316‑M2/58‑1 (MQ=255) gTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTa > 1:2761477/1‑54 (MQ=255) tACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGaa > 1:491976/1‑63 (MQ=255) ctatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCt < 1:3454612‑M2/63‑1 (MQ=255) aCTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAAc > 1:4867526/1‑63 (MQ=255) aCTATATCGGCTGAAATTAATGAGGTCATAACCAAATGGATAGTTCGTTTACGCCCATTGAAc > 1:5155347/1‑63 (MQ=255) atctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTa > 1:543315‑M2/7‑70 (MQ=255) tctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTaa > 1:929124‑M2/6‑70 (MQ=255) tatCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTaaa < 1:3769363/69‑1 (MQ=255) taaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAg > 1:941663‑M2/4‑39 (MQ=255) taaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAg > 1:1109138‑M2/4‑39 (MQ=255) aaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAt > 1:2425333‑M2/3‑70 (MQ=255) tCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt < 1:2938886/43‑1 (MQ=255) tCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt < 1:2154356/43‑1 (MQ=255) tCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAttt > 1:2127341/1‑71 (MQ=255) tCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAtt < 1:709203/70‑1 (MQ=255) aCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTaaa < 1:631575‑M2/66‑1 (MQ=255) cGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGa > 1:4189879/1‑54 (MQ=255) cGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAttt > 1:358247/1‑70 (MQ=255) | TTATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTT > W3110S.gb/2809328‑2809467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |