| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1209382 | 24 (0.430) | 31 (0.800) | 23/70 | NT | 68.5% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | = 1211179 | 12 (0.310) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
TGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA > W3110S.gb/1211109‑1211249 | tGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCagag > 1:5064866/1‑71 (MQ=255) cATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcc > 1:1051558‑M2/1‑69 (MQ=255) agccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc > 1:1159600‑M2/1‑63 (MQ=255) ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctccca > 1:1415480‑M2/1‑61 (MQ=255) gccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaac < 1:1040548‑M2/71‑14 (MQ=255) ccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaacc > 1:2459033‑M2/1‑57 (MQ=255) cTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaacca > 1:26553‑M2/1‑56 (MQ=255) cTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaacca > 1:1243597‑M2/1‑56 (MQ=255) cTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaacca > 1:4461208‑M2/1‑56 (MQ=255) tGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaac > 1:2722798‑M2/1‑55 (MQ=255) tGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc < 1:2338241‑M2/59‑8 (MQ=255) gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttt > 1:4934532‑M2/1‑50 (MQ=255) gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttt > 1:804262‑M2/1‑50 (MQ=255) gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggtt > 1:1368555‑M2/1‑50 (MQ=255) gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggtt > 1:1362662‑M2/1‑50 (MQ=255) cGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCGAAACCAACGTTTa > 1:4292411/1‑71 (MQ=255) cGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGtt < 1:3522391/69‑1 (MQ=255) ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc < 1:4661546‑M2/71‑24 (MQ=255) ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc < 1:4655636‑M2/71‑24 (MQ=255) aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc < 1:4353634‑M2/69‑24 (MQ=255) aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc < 1:4630442‑M2/69‑24 (MQ=255) tGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaagg > 1:1578414‑M2/1‑44 (MQ=255) cTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaa > 1:2192623‑M2/1‑41 (MQ=255) tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg < 1:2572469‑M2/71‑32 (MQ=255) tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc < 1:1439597‑M2/63‑24 (MQ=255) gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg > 1:344997/1‑69 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGaaa < 1:2449960/71‑1 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcc < 1:260584‑M2/64‑31 (MQ=255) cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggtttt > 1:2826678‑M2/1‑33 (MQ=255) cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATa < 1:46945/71‑1 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcaca > 1:3115595‑M2/1‑32 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtt > 1:2640162‑M2/1‑32 (MQ=255) cGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacag < 1:1791552‑M2/71‑41 (MQ=255) ggAACCGGGACACCAACAGGTAATGCAGAGccttctccgaaaccaaggtttt < 1:121686‑M2/52‑23 (MQ=255) ggAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt < 1:1935249‑M2/71‑42 (MQ=255) ggAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAt > 1:4113021/1‑59 (MQ=255) gAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaacca < 1:757683‑M2/44‑16 (MQ=255) aaCCGGGACACCAACTGGTAATGCAGAGccttctcccaaagcaaggttttcgagtgccgtttgca > 1:1570672‑M2/1‑28 (MQ=255) ccGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGc > 1:830251/1‑70 (MQ=255) acacCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccga > 1:1304394‑M2/1‑21 (MQ=255) acacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATgg > 1:4602520/1‑71 (MQ=255) cacCAACAGGTAAAGCAGAGccttctcccaaaccaaggttttc < 1:2750369‑M2/43‑24 (MQ=255) acCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatc < 1:4144240‑M2/66‑48 (MQ=255) acCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgt > 1:4409365‑M2/1‑19 (MQ=255) ccAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATa < 1:3751730/56‑1 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgattt > 1:509271‑M2/1‑16 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcga < 1:4374777‑M2/41‑26 (MQ=255) aaCAGGTAATGCAGAGccttctcacaaaccaaggttttcg < 1:1297718‑M2/40‑25 (MQ=255) aCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgat > 1:3821002‑M2/1‑15 (MQ=255) aCAGGTAATGCAGAGccttctcccaaaccaaggttttcg < 1:2252032‑M2/39‑25 (MQ=255) aCAGGTAATGCAGAGccttctcccaaaccaaggtttcgagagccgtttgcacagtgccatccgatttgata < 1:3869710‑M2/71‑57 (MQ=255) aCAGGTAATGCAGAGccttctcccaaaacaaggttttcgagag < 1:4547043‑M2/43‑29 (MQ=255) cAGGTAATGCAGAGccttctcccaaaccaaggttttcga < 1:2419794‑M2/39‑26 (MQ=255) cAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat > 1:3097922/1‑70 (MQ=255) aGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatat > 1:410641‑M2/1‑13 (MQ=255) ggTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatc < 1:2363746‑M2/59‑48 (MQ=255) aaTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc < 1:457878‑M2/70‑62 (MQ=255) aTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcc < 1:632190‑M2/70‑63 (MQ=255) aTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcc < 1:1846216‑M2/70‑63 (MQ=255) aTGCAGAGCCTTCTCCCAAACCAACGTTTATTAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt > 1:1097757/1‑71 (MQ=255) aTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt > 1:4877321/1‑71 (MQ=255) gCAGCGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa > 1:1670692/1‑53 (MQ=255) agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgcca > 1:2351941‑M2/1‑4 (MQ=255) gagccttctcccaaaccaaggttttcgagagccgt > 1:5183949‑M2/1‑3 (MQ=255) agccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacgga < 1:3267520‑M2/71‑70 (MQ=255) agccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttga < 1:2628656‑M2/57‑56 (MQ=255) gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggat < 1:4521038‑M2/71‑71 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAc > 1:950010/1‑69 (MQ=255) | TGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA > W3110S.gb/1211109‑1211249 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |