| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2108326 | 20 (0.360) | 3 (0.060) | 3/88 | NT | 12.7% | coding (1038/1167 nt) | wbbH | O‑antigen polymerase |
| ? | W3110S.gb | = 2108333 | 24 (0.490) | coding (1031/1167 nt) | wbbH | O‑antigen polymerase | |||||
TGCTAATATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAACACCTGAAATACAGCCATGAATAAC > W3110S.gb/2108265‑2108400 | tGCTAATATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATGAATAAAa < 1:1744475‑M2/70‑2 (MQ=255) gCTAATATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATGAATAAAata < 1:1150321‑M2/71‑4 (MQ=255) cTAATATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATGAATAAAatat < 1:4933179‑M2/71‑5 (MQ=255) tAATATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATGAATAAAatatt < 1:1060981‑M2/71‑6 (MQ=255) tAATATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATGAATAAAat > 1:1160147‑M2/1‑66 (MQ=255) atatTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATGAATAAAatatttt < 1:2821199‑M2/71‑8 (MQ=255) atatTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATGAATAAAatatttt > 1:2735378‑M2/1‑64 (MQ=255) atTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATGAATAAAa < 1:4398963‑M2/63‑2 (MQ=255) aTGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATGAATAAAATATTTTc > 1:2494394/1‑63 (MQ=255) aaGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATGAATAAAATATTTTCACAGATATGt > 1:3141582/1‑70 (MQ=255) aaGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATGAATAAAATATTTTCACAGATATGt > 1:5174395/1‑70 (MQ=255) aGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATGAATAAAATATTTTCACAGATATGTaa > 1:1915537/1‑71 (MQ=255) aTAAAAAATGAAAGAAAAGGTATAAATAAAATATGAATAAAATATTTTCACAGATATGTAATTTCGAGACa < 1:340487/71‑1 (MQ=255) aaaaaaTGAAAGAAAAGGTATAAATAAAATATGAATAAAATATTTTCACAGATATGTAATTTCGAGACAAt > 1:4886037/1‑71 (MQ=255) gaaagaaaAGGTATAAATAAAATATGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCAt > 1:2827940/1‑70 (MQ=255) agaaaAGGTATAAATAAAATATGAATAAAATATTTTCACAGATATGTAATTTCGAGACAAtct < 1:1029156/63‑1 (MQ=255) gaaaAGGTATAAATAAAATATGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCATaaaa > 1:3556271/1‑70 (MQ=255) aaaGGTATAAATAAAATATGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAacac > 1:2424792/1‑71 (MQ=255) aaaGGTATAAATAAAATATGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAacac > 1:474697/1‑71 (MQ=255) aaaGGTATAAATAAAATATGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAacac > 1:2646733/1‑71 (MQ=255) aaaGGTATAAATAAAATATGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAaca < 1:4124657/70‑1 (MQ=255) taaataaaATATGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCAt < 1:2912124/57‑1 (MQ=255) taaataaaATATGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAACACCTGaaa < 1:5145204/70‑1 (MQ=255) aataaaataTGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAACACCTGAAATa > 1:2038199/1‑70 (MQ=255) aataaaataTGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAACACCTGAAATa > 1:4935190/1‑70 (MQ=255) ataaaataTGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAACACCTGAAATa > 1:4278243/1‑69 (MQ=255) aaataTGAATAAAatattttatttataccttttctttcattttttatcatgaaagcttcat > 1:3962146‑M2/1‑13 (MQ=255) aaataTGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAACACCt > 1:2446310/1‑60 (MQ=255) tatGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCAt < 1:534138/48‑1 (MQ=255) tatGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAACACCTGa < 1:858481/59‑1 (MQ=255) tatGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAACACCTGAAATACAGCCAt > 1:2259488/1‑70 (MQ=255) atGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAACAcc < 1:2306490/55‑1 (MQ=255) atGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAACACCTGAAATACAGCCATg > 1:3219564/1‑70 (MQ=255) tGAATAAAatattttatttataccttttctttcattttttatcatgaaagcttcatgactaatattagcag > 1:3734508‑M2/1‑8 (MQ=255) tGAATAAAatattttatttataccttttctttcatttt > 1:1951895‑M2/1‑8 (MQ=255) gAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAACACCTGAAATACAGCCATGaa > 1:3071451/1‑70 (MQ=255) tAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAac < 1:4512783/47‑1 (MQ=255) aaaaTATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAACACCTGAAATACAGCCATGAATAAc > 1:3465813/1‑70 (MQ=255) aaTATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAacac > 1:1347067/1‑46 (MQ=255) aaTATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAACACCTGAAATACa > 1:3304989/1‑56 (MQ=255) | TGCTAATATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATGAATAAAATATTTTCACAGATATGTAATTTCGAGACAATCTCCATAAAACACCTGAAATACAGCCATGAATAAC > W3110S.gb/2108265‑2108400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |