| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 69 (1.250) | 41/100 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 190 total aligned reads displayed.
AAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATACC > W3110S.gb/3920211‑3920350 | ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt < 1:1667112‑M2/70‑2 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacactt < 1:898544‑M2/6‑3 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacactt < 1:1933602‑M2/6‑3 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt > 1:926751‑M2/66‑71 (MQ=255) tccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTtcg < 1:4585584‑M2/8‑2 (MQ=255) cacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:2631003‑M2/71‑6 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCttt < 1:1435928‑M2/10‑1 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:1034012‑M2/62‑70 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct < 1:5085501‑M2/71‑7 (MQ=255) acTTTCTGAACTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:2875‑M2/70‑6 (MQ=255) cTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatttt > 1:2434302‑M2/1‑64 (MQ=255) aacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa > 1:3599052‑M2/59‑69 (MQ=255) tCTGACCTTCGTCCAGATATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:273893‑M2/71‑11 (MQ=255) caatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGc > 1:3481847‑M2/57‑71 (MQ=255) cTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:538964‑M2/70‑11 (MQ=255) atttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCa < 1:4610802‑M2/17‑1 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCAt > 1:3410805‑M2/54‑71 (MQ=255) aCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccag > 1:162760‑M2/1‑57 (MQ=255) aCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccag > 1:311355‑M2/1‑57 (MQ=255) cTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:1217425‑M2/71‑17 (MQ=255) aaaacaagagcctcgcttaggcctctgtccatattacgtgggtaggatcACACTTc > 1:499137‑M2/50‑56 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACCTCTTTa < 1:7889‑M2/11‑1 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:3072704‑M2/71‑20 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:3078653‑M2/71‑20 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata > 1:1347293‑M2/1‑52 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata > 1:3582964‑M2/1‑52 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg < 1:2028001‑M2/71‑22 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt < 1:511124‑M2/51‑2 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga < 1:2226401‑M2/71‑24 (MQ=255) aagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTtcg > 1:248351‑M2/45‑51 (MQ=255) aagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCttt < 1:3768536‑M2/10‑1 (MQ=255) aagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag > 1:2864964‑M2/45‑56 (MQ=255) aagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag > 1:1708456‑M2/45‑56 (MQ=255) aagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCa < 1:4965035‑M2/17‑1 (MQ=255) agagATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggac > 1:2205149‑M2/1‑47 (MQ=255) agagATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct > 1:2499791‑M2/1‑47 (MQ=255) gaacgtcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAg > 1:3870794‑M2/43‑69 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct > 1:656887‑M2/1‑45 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATc > 1:4223959‑M2/42‑60 (MQ=255) gaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct > 1:4703251‑M2/1‑44 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcg < 1:2384700‑M2/70‑30 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:3403589‑M2/9‑1 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcTCACATCTTTAGAGCCATCGTCAGGAGTGATgaagc > 1:335480‑M2/36‑71 (MQ=255) ccATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccatcaatagtggacacg > 1:2564008‑M2/1‑35 (MQ=255) ccATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacg < 1:1045659‑M2/62‑28 (MQ=255) ccATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat < 1:3313041‑M2/52‑18 (MQ=255) aggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccga < 1:3416944‑M2/39‑1 (MQ=255) cATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcgg > 1:3257778‑M2/1‑34 (MQ=255) gcctgtgtccatattacgtgggtaggatcACACATCTTTag > 1:2220467‑M2/30‑41 (MQ=255) gcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat < 1:1404381‑M2/31‑1 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt < 1:2452735‑M2/68‑37 (MQ=255) cctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaagcc < 1:413412‑M2/43‑1 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt < 1:4638316‑M2/44‑1 (MQ=255) tgtgtccatattacgtgggtaggatcACACATCTTTAGAGc < 1:492318‑M2/15‑1 (MQ=255) tgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg > 1:4274712‑M2/27‑55 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga > 1:4121413‑M2/1‑29 (MQ=255) gtgtccatattacgtgggtaggatcAAACATCTTAAGAGACAt > 1:4802050‑M2/26‑43 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt < 1:4495145‑M2/46‑1 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt < 1:3807519‑M2/46‑1 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCtt < 1:315798‑M2/45‑1 (MQ=255) gtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:486071‑M2/24‑46 (MQ=255) gATAGCAGAGAAGTGTAGGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaact > 1:4272223‑M2/1‑24 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:4275305‑M2/1‑24 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag > 1:3894640‑M2/1‑24 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCa > 1:5183545‑M2/21‑37 (MQ=255) atattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatg < 1:3941755‑M2/32‑1 (MQ=255) atattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatg < 1:2831492‑M2/32‑1 (MQ=255) atattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg < 1:2681750‑M2/29‑1 (MQ=255) atattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaag > 1:2763993‑M2/20‑60 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCg < 1:1385360‑M2/53‑1 (MQ=255) tttcgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:1826972‑M2/17‑71 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:3724427‑M2/24‑1 (MQ=255) ttacgtgggtaggatcAAACATCTTTAGAGCCATCGTCAg > 1:4521330‑M2/17‑40 (MQ=255) agagAAGTGTACGAACACtgatcttacccagcaatagtg > 1:3683743‑M2/1‑18 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:1258219‑M2/1‑17 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt < 1:4330315‑M2/68‑52 (MQ=255) gtgggtaggttcACACATCTTTAGAGGCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAAc < 1:4453559‑M2/59‑1 (MQ=255) gtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:2413230‑M2/13‑35 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcaga > 1:3471498‑M2/1‑16 (MQ=255) gaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag < 1:2356621‑M2/71‑57 (MQ=255) gtgtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt < 1:4509288‑M2/70‑59 (MQ=255) tgtACGAACACtgatcttacccggcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:2996940‑M2/1‑11 (MQ=255) tgtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtc > 1:4776192‑M2/1‑11 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:2086579‑M2/64‑1 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact < 1:4387506‑M2/71‑63 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcaga < 1:870281‑M2/64‑56 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt > 1:1618666‑M2/1‑9 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggct > 1:3523333‑M2/1‑9 (MQ=255) aCGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:1189552‑M2/1‑8 (MQ=255) aCGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:2129912‑M2/1‑8 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:1420573‑M2/71‑65 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca > 1:2237731‑M2/1‑7 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaa < 1:3991395‑M2/50‑44 (MQ=255) tcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:3880560‑M2/3‑71 (MQ=255) gAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:5142750‑M2/1‑6 (MQ=255) gAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:4152351‑M2/1‑6 (MQ=255) cACACATCTTTAGAGCCATCGTCAGGAGTGATgaag < 1:835327‑M2/35‑1 (MQ=255) cacaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAc < 1:1058113/71‑1 (MQ=255) acaTCTTTAGAGCCATCGTCAGGAGTGATGTAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAcc < 1:4716948/71‑1 (MQ=255) caTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAc > 1:3991639/1‑69 (MQ=255) | AAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATACC > W3110S.gb/3920211‑3920350 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |