| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3316062 | 67 (1.190) | 3 (0.060) | 3/88 | NT | 5.1% | coding (1320/1488 nt) | nusA | transcription termination/antitermination L factor |
| ? | W3110S.gb | = 3316080 | 54 (1.110) | coding (1302/1488 nt) | nusA | transcription termination/antitermination L factor | |||||
GCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCTGTGCAATGGTGGCCAGTGCATTTT > W3110S.gb/3316016‑3316150 | gCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCagatcg > 1:762047‑M2/1‑65 (MQ=255)gCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCagatcg > 1:4216070‑M2/1‑65 (MQ=255) cGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCagatcgt < 1:2143717‑M2/71‑8 (MQ=255) tACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCa < 1:1600020/71‑1 (MQ=255) aaaCGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGcc > 1:2911786/1‑71 (MQ=255) aaaCGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGcc > 1:2905642/1‑71 (MQ=255) aaCGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCa > 1:999736/1‑67 (MQ=255) aaCGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCa > 1:2247757/1‑67 (MQ=255) aaCGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCg > 1:3208516/1‑71 (MQ=255) aCGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCag > 1:4178894‑M2/1‑57 (MQ=255) cGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGt < 1:97039/71‑1 (MQ=255) ccACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGttt < 1:352650/71‑1 (MQ=255) cACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTg > 1:3594853/1‑71 (MQ=255) aCGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGttt < 1:3178450/69‑1 (MQ=255) cGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGtt < 1:511855/71‑1 (MQ=255) cGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTAAGCAGATCGTCAGCCGGTTTGt > 1:112135/1‑70 (MQ=255) cGGGCGGCCAGTTTGAATGCAAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGt > 1:1931897/1‑70 (MQ=255) ggcggcCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTAt < 1:3200047/71‑1 (MQ=255) ggcggcCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTAt > 1:4564121/1‑71 (MQ=255) ggcggcCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTAt < 1:3925313/71‑1 (MQ=255) ggcggcCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTAt < 1:261412/71‑1 (MQ=255) cggcCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCa < 1:3485040/71‑1 (MQ=255) gcCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCAcc < 1:2908117/71‑1 (MQ=255) ccAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCAcc < 1:1793770/70‑1 (MQ=255) aGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTcagc > 1:2559646/1‑42 (MQ=255) aGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCgg > 1:455653/1‑56 (MQ=255) aGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCAcc > 1:540875/1‑68 (MQ=255) aGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAg > 1:4098479/1‑71 (MQ=255) aGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAg > 1:4564801/1‑71 (MQ=255) aGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAg > 1:1892282/1‑71 (MQ=255) gTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAgg > 1:126768/1‑71 (MQ=255) gTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAgg > 1:3776262/1‑71 (MQ=255) gTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAg > 1:1673566/1‑70 (MQ=255) tttGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCagatcgt > 1:702051‑M2/1‑40 (MQ=255) tttGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCag > 1:5120337‑M2/1‑40 (MQ=255) tttGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGttt < 1:3819344/57‑1 (MQ=255) tttGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGt > 1:684334/1‑55 (MQ=255) tttGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATTACCGa > 1:4669730/1‑68 (MQ=255) tttGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGa > 1:1158550/1‑68 (MQ=255) ttGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCgg > 1:1824531/1‑53 (MQ=255) tGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCag < 1:927292‑M2/40‑3 (MQ=255) aTGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCttt < 1:2368020/69‑1 (MQ=255) tGCCAAATCACGATCTACCCCTTCAAGGTTCAGCaga > 1:684665‑M2/1‑34 (MQ=255) cAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGtt < 1:2017067/51‑1 (MQ=255) aaaTCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTcc < 1:599589/69‑1 (MQ=255) aaaTCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTg < 1:4406356/71‑1 (MQ=255) aaTCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCa > 1:4877125/1‑38 (MQ=255) aaTCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTgg < 1:1269188/71‑1 (MQ=255) aTCACTATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCTGTTTg < 1:4137576/46‑1 (MQ=38) aTCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAg > 1:3982642/1‑38 (MQ=255) aTCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTg < 1:4344046/46‑1 (MQ=255) aTCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATc < 1:4798530/51‑1 (MQ=255) cGATCTACCCCTTCAAGGTTCAGCagatcgtgatttggcattcaaac > 1:2862715‑M2/1‑24 (MQ=255) gATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTAt > 1:2888635/1‑45 (MQ=255) tCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTAt > 1:1893133/1‑43 (MQ=255) tCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCtgtg > 1:2941303/1‑70 (MQ=255) tCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCtgtg > 1:3947493/1‑70 (MQ=255) tCTACCCCTT‑AAGGTTCAGCAGATCGTCAGCCGGTTTGTTAt > 1:2636700/1‑42 (MQ=38) aCCCCTTCAAGGTTCATCAGATCGTCAGCCGGttt < 1:4481570/35‑1 (MQ=255) aCCCCTTCAAGGTTCAGCagatcgtgatttggcattcaaactg > 1:420045‑M2/1‑18 (MQ=255) aCCCCTTCAAGGTTCAGCAGATCGTCAGCCGGttt < 1:2271107/35‑1 (MQ=255) ccccTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCTGTGc < 1:4544313/67‑1 (MQ=255) cccTTCAAGGTTCAGCagatcgtgatttggcattcaaactggc < 1:4314462‑M2/43‑28 (MQ=255) cccTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGTGCCTGTGCa < 1:1471786/67‑1 (MQ=255) cccTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCTGTGCAAtgg < 1:994457/71‑1 (MQ=255) cccTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCTGTGCAAtgg < 1:3727592/71‑1 (MQ=255) ccTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCTGTGCAAtggt > 1:1444979/1‑71 (MQ=255) ttCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATc < 1:420696/36‑1 (MQ=255) ttCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTcc > 1:2548059/1‑52 (MQ=255) cAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTttcttc > 1:507444/1‑49 (MQ=255) cAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCtgt > 1:1629097/1‑59 (MQ=255) aGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCtgtg > 1:2563201/1‑58 (MQ=255) aGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCTGTGCAATGGTGGCCAg < 1:4724220/71‑1 (MQ=255) tCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCTGTGCAATGGTGGCCAGTGCa > 1:1046704/1‑71 (MQ=255) cagcagATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCTGTGCAATGGTGGCCAGTGCAt > 1:358976/1‑71 (MQ=255) cagcagATCGTCAGACGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCt < 1:3832541/50‑1 (MQ=255) gcagATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCTGTGCAATGGTCGCCAGTGCAttt < 1:4431780/71‑1 (MQ=255) cagATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCTGTGCAATGGTGGCCAGTGCAtttt < 1:3810074/71‑1 (MQ=255) | GCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCTACCCCTTCAAGGTTCAGCAGATCGTCAGCCGGTTTGTTATCACCGAGGCTTTCTTCCTGGGCCTGTGCAATGGTGGCCAGTGCATTTT > W3110S.gb/3316016‑3316150 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |