| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4281453 | 34 (0.600) | 4 (0.080) | 3/92 | NT | 10.9% | coding (393/465 nt) | soxR | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| ? | W3110S.gb | = 4281463 | 35 (0.690) | coding (403/465 nt) | soxR | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing | |||||
TGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCAC > W3110S.gb/4281395‑4281533 | tGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCcg < 1:4752080‑M2/71‑3 (MQ=255) cGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCcag < 1:1615218‑M2/70‑4 (MQ=255) cGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCAGTTGCGTAACCcg > 1:4472770‑M2/1‑67 (MQ=255) gTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCcgggc > 1:1070787‑M2/1‑66 (MQ=255) gTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCcgggc > 1:3642675‑M2/1‑66 (MQ=255) gAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCc > 1:2697883‑M2/1‑61 (MQ=255) aCTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCt < 1:4139583/71‑1 (MQ=255) cTGGACGTATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCt > 1:4675865/1‑70 (MQ=255) cTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCg > 1:363278/1‑64 (MQ=255) cTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCt > 1:2678769/1‑70 (MQ=255) tGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCc > 1:2587317‑M2/1‑57 (MQ=255) gACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCg > 1:5049081/1‑65 (MQ=255) cGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGgag < 1:4543255/71‑1 (MQ=255) ggATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGgaga < 1:1132918/71‑1 (MQ=255) tGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAg > 1:4279/1‑64 (MQ=255) tGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGagaaga < 1:4364275/71‑1 (MQ=255) tGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGagaaga < 1:4130539/71‑1 (MQ=255) tATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGaagaag < 1:909009/71‑1 (MQ=255) aTTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGagaaga < 1:2861498/68‑1 (MQ=255) aTTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAgg > 1:2584741/1‑71 (MQ=255) ttGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAcc > 1:4678493/1‑54 (MQ=255) ttGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGAcc > 1:879252/1‑54 (MQ=255) ttGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAgg > 1:4749872/1‑70 (MQ=255) gTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTAc < 1:4216384/70‑1 (MQ=255) ttGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCg < 1:962053/71‑1 (MQ=255) gtgGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTAc > 1:1742424/1‑67 (MQ=255) ccTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCg < 1:1800785/38‑1 (MQ=255) ccTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGc < 1:817386/70‑1 (MQ=255) ccTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGc < 1:3121378/70‑1 (MQ=255) tCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTg < 1:1035558/69‑1 (MQ=255) tCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCt > 1:4929853/1‑71 (MQ=255) gcgcAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGgcg < 1:4383610/59‑1 (MQ=255) gcgcAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTgg < 1:2746307/71‑1 (MQ=255) gcgcAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTg < 1:3448057/70‑1 (MQ=255) cAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAg < 1:643035/71‑1 (MQ=255) aGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGa < 1:3938144/71‑1 (MQ=255) gTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGAt < 1:305251/71‑1 (MQ=255) tGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGt > 1:3208827/1‑46 (MQ=255) tGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCa > 1:4337981/1‑55 (MQ=255) aTTGCCCGTTGCGTAACCcgggcaatcactgcgcgaaaggcagccacaaccaatacatccgtc > 1:4923512‑M2/1‑18 (MQ=255) tGCCCGTTGCGTAACCcgggcaatcactgcgcgaaaggcagccacaaccaatacatccgtccagttcgtca < 1:173723‑M2/71‑56 (MQ=255) cccGTTGCGTAACCcgggcaatcactgcgcgaaaggcagccacaaccaatacatccgtccagttc > 1:4696369‑M2/1‑14 (MQ=255) cccGTTGCGTAACCcgggcaatcactgcgcgaaaggcagccacaaccaatacatccgtccagttc > 1:1482677‑M2/1‑14 (MQ=255) cccGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACaaa < 1:576576/71‑1 (MQ=255) cccGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACaaa < 1:1134815/71‑1 (MQ=255) ttGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTa < 1:3080052/71‑1 (MQ=255) ttGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTa < 1:785289/71‑1 (MQ=255) ttGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTa < 1:1512856/71‑1 (MQ=255) cGTAACCCGGGCGATCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGaa > 1:5020404/1‑54 (MQ=255) gTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACaaaa > 1:2098119/1‑64 (MQ=255) gTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACaa < 1:3552127/62‑1 (MQ=255) tAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATg < 1:5120142/56‑1 (MQ=255) tAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATg < 1:1324543/56‑1 (MQ=255) aCCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAgcgc > 1:4447330/1‑70 (MQ=255) aCCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAgcgc < 1:397159/70‑1 (MQ=255) cccGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACaa < 1:2143776/58‑1 (MQ=255) cccGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACaa < 1:2149947/58‑1 (MQ=255) ccGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCcac < 1:2997233/71‑1 (MQ=255) ccGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCca > 1:3311515/1‑70 (MQ=255) | TGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCAC > W3110S.gb/4281395‑4281533 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |