| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 81 (1.630) | 42/100 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 105 total aligned reads displayed.
GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2173495‑2173564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920278‑3920348 GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA > 1:1959040/1‑71 CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA > 1:1281124/1‑71 CAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACt > 1:1496132/1‑70 CAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAC > 1:2121988/1‑68 AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACAT > 1:4015795/1‑71 TCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCT > 1:3698038/1‑71 TCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:4053583/64‑1 TCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:2459126/64‑1 TCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:2010387/64‑1 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCggt > 1:4359356/1‑68 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCggt > 1:3968343/1‑68 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCgg < 1:640236/70‑3 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCgg < 1:910120/70‑3 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT > 1:4100827/1‑70 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATC > 1:855427/1‑68 GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAG < 1:2755783/71‑1 AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTA > 1:526943/1‑69 ACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAG > 1:4471532/1‑71 ACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAC > 1:4580744/1‑59 CAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGC > 1:921892/1‑71 AATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGC > 1:193964/1‑70 AATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGC > 1:3373188/1‑70 AATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGC > 1:3588699/1‑70 ATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA > 1:1922265/1‑57 TTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATC > 1:1941081/1‑71 TTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATC > 1:4165708/1‑71 TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCG > 1:3582605/1‑71 TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCG > 1:260657/1‑71 AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTC < 1:2994557/71‑1 AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGT < 1:3569787/70‑1 AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGT < 1:4580888/70‑1 AACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG < 1:215096/71‑1 AACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG < 1:2967178/71‑1 AACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG < 1:1611826/71‑1 CAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGA < 1:4044399/71‑1 AAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGA > 1:1999901/1‑57 AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTC < 1:2957561/65‑1 GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTG < 1:3387076/71‑1 GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTG < 1:4217509/71‑1 GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTG < 1:2730564/71‑1 ACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGAT > 1:3219415/1‑71 CCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACt < 1:2268426/44‑2 CTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAC < 1:3628770/40‑1 TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCA > 1:1531245/1‑54 TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:1517280/38‑1 CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAG > 1:1946783/1‑71 CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAG > 1:3665088/1‑71 CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA > 1:4182572/1‑37 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGC > 1:2328735/1‑71 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGC > 1:1451560/1‑71 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAA < 1:809204/69‑1 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAA < 1:227718/69‑1 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAA < 1:1371816/69‑1 AGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCG < 1:3732369/69‑1 CTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCT < 1:1682944/71‑1 CTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCT > 1:3250195/1‑71 GTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGT < 1:2320162/53‑1 GTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG < 1:293217/49‑1 TCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTG > 1:2392184/1‑69 TCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCA > 1:1371146/1‑45 TCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCA > 1:1506923/1‑45 ATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGC < 1:4045516/71‑1 TATTACGTTGGTAGGATCACACATCTTTAGAGCCATCGTCAG < 1:1505611/42‑1 TATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCG > 1:3588654/1‑71 TATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG < 1:822552/42‑1 TATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG < 1:4409568/42‑1 ATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTT > 1:1067413/1‑63 TTACGTGGGTTGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGC > 1:4013588/1‑52 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGT > 1:1167082/1‑70 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGT < 1:3844892/70‑1 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGACGAAGCCTTTGTCAGCGTT > 1:1822151/1‑71 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGT > 1:2962820/1‑44 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGT > 1:2410368/1‑44 TACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT > 1:1232782/1‑70 TACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT > 1:4315860/1‑70 TACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT > 1:2539314/1‑70 TACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATG < 1:2320632/47‑1 TACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGG > 1:1457367/1‑40 ACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTG < 1:2120686/70‑1 ACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAG > 1:3369274/1‑55 ACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAG < 1:756100/41‑1 CGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGA < 1:3111035/70‑1 CGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGA < 1:3116645/70‑1 CGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGAT < 1:3463713/44‑1 GTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAAC < 1:1471939/71‑1 GTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTG < 1:650719/64‑1 GTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTG < 1:2857233/64‑1 GTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTG < 1:4327334/64‑1 GTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTG < 1:2133212/64‑1 AGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTT > 1:3293548/1‑70 AGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAA > 1:7015/1‑64 GGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTA > 1:256602/1‑71 GGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTA > 1:1274608/1‑71 GGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTT < 1:3979615/70‑1 GGATCACACATCTTAAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTT < 1:689403/70‑1 GATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAC < 1:3172657/71‑1 GATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAC < 1:2710378/71‑1 CACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA > 1:4336266/1‑70 CACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGC > 1:1774828/1‑53 ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > 1:1519173/1‑71 GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2173495‑2173564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920278‑3920348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |