New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 2979625	68 (1.340)	6 (0.120)	3/98	NT	8.7%	coding (1214/1419 nt)	araE	arabinose transporter
	?	W3110S.gb	= 2979644	61 (1.250)					coding (1195/1419 nt)	araE	arabinose transporter

AGAACGTACCGGCAGCGCCAATGCTATCAAGCAGTGTCAGGAAGGTCGCGCCGATAATCATATTCGACACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2979554‑2979625 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccTGTTCGACCACCACGAACTGGGTGTCGAATATGATTATCGGCGCGACCTTCCTGACACTGCTTGATAGCA  <  W3110S.gb/2979644‑2979575                                                                                                                                                AGAACGTACCGGCAGCGCCAATGCTATCAAGCAGTGTCAGGAAGGTCGCGCCGATAATCATATTCGACACC                                                                         >  1:3455289/1‑71                        CTATCAAGCAGTGTCAGGAAGGTCGCGCCGATAATCATATTCGACACCCTGTTCGACCACCACGAACTGG                                                   <  1:620435/70‑1                           TCAAGCAGTGTCAGGAAGGTCGCGCCGATAATCATATTCGACACCCTGTTCGACCACCACGAACTGGGT                                                 <  1:340187/69‑1                             AAGCAGTGTCAGGAAGGTCGCGCCGATAATCATATTCGACACCCTGTTCGACCACCACGAACTGGGTGT                                               >  1:1131930/1‑69                             AAGCAGTGTCAGGAAGGTCGCGCCGATAATCATATTCGACACCCTGTTCGACCACCACGAACTGGGTGT                                               >  1:3229987/1‑69                             AAGCAGTGTCAGGAAGGTCGCGCCGATAATCATATTCGACACCCTGTTCGACCACCACGAACTGGGTGT                                               >  1:3235573/1‑69                             AAGCAGTGTCAGGAAGGTCGCGCCGATAATCATATTCGACACCCTGTT                                                                    >  1:2665358/1‑48                                                     GATAATCATATTCGACACCCTGTTCGACCACCACGAACTGGGT                                                 <  1:640348/43‑1                                                                        CTGTTCGACCACCACGAACTGGGTGTCGAATATGATTATCGGCGCGACCTTCCTGACACTGCTTGATAGCA  >  1:1694105/1‑71                                                                        CTGTTCGACCACCACGAACTGGGTGTCGAATATGATTATCGGCGCGACCTTCCTGACACTGCTTGATAGCA  >  1:2380747/1‑71                                                                        CTGTTCGACCACCACGAACTGGGTGTCGAATATGATTATCGGCGCGACCTTCCTGACACTGCTTGATAGCA  >  1:2386046/1‑71                                                                                                                                                AGAACGTACCGGCAGCGCCAATGCTATCAAGCAGTGTCAGGAAGGTCGCGCCGATAATCATATTCGACACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2979554‑2979625 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccTGTTCGACCACCACGAACTGGGTGTCGAATATGATTATCGGCGCGACCTTCCTGACACTGCTTGATAGCA  <  W3110S.gb/2979644‑2979575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.