New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	3842136 =	85 (1.670)	3 (0.060)	3/94	NT	4.2%	coding (1032/1074 nt)	rfaK	lipopolysaccharide core biosynthesis
	?	W3110S.gb	3842162 =	58 (1.240)					coding (1058/1074 nt)	rfaK	lipopolysaccharide core biosynthesis
Rejected: Frequency below/above cutoff threshold.

ATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/3842207‑3842136 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agttGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTT  >  W3110S.gb/3842162‑3842204                                                                                                                     ATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGT                                              <  1:2411909/71‑1 ATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGT                                              <  1:57647/71‑1                   TGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAG                                               >  1:1552298/1‑52                   TGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAG                                               >  1:3690133/1‑52                                              CAACTTAATATCTTTACTGAATTAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTT  >  1:32741/1‑70                                               AACTTAATCTCTTTACTGAATTAGTTGTATAGATAAGAAGTGAGTTTTAACTCAC                <  1:3735749/55‑1                                                 CTTAATCTCTTTACTGAATTAGTTGTATAGATAAGAAGTGAGTTTTA                      <  1:2688475/47‑1                                                                                                                     ATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/3842207‑3842136 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agttGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTT  >  W3110S.gb/3842162‑3842204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.