BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 256044	87 (1.710)	5 (0.100)	3/100	NT	5.8%	coding (68/459 nt)	gpt	guanine‑hypoxanthine phosphoribosyltransferase
*	?	W3110S.gb	= 256072	77 (1.550)	5 (0.100)	3/100	NT	5.8%	coding (96/459 nt)	gpt	guanine‑hypoxanthine phosphoribosyltransferase

Only 100 of 136 total aligned reads displayed.

CACATGAGCGAAAAATACATCGTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCGGTCTGGTACCGGGTGCGTTACTG  >  W3110S.gb/255974‑256114

cacaTGAGCGAAAAATACATCGTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACT                                                                        >  1:501783‑M1/1‑71 (MQ=255)

cacaTGAGCGAAAAATACATCGTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACT                                                                        >  1:1138278‑M1/1‑71 (MQ=255)

cacaTGAGCGAAAAATACATCGTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACT                                                                        >  1:2249778‑M1/1‑71 (MQ=255)

        cGAAAAATACATCGTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCtt                                                                <  1:1478515/71‑1 (MQ=255)

         gAAAAATACATCGTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTc                                                               <  1:4134926/71‑1 (MQ=255)

          aaaaaTACATCGTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCt                                                              <  1:3251850/71‑1 (MQ=255)

           aaaaTACATCGTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGAt                                                                     >  1:3833971/1‑63 (MQ=255)

              aTACATCGTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAAc                                                          <  1:883323/71‑1 (MQ=255)

              aTACATCGTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAAc                                                          <  1:1290419/71‑1 (MQ=255)

              aTACATCGTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAAc                                                          <  1:4594481/71‑1 (MQ=255)

                aCATCGTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACaa                                                        >  1:1904947/1‑71 (MQ=255)

                     gTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGaa                                                   <  1:2490585/71‑1 (MQ=255)

                     gTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGaa                                                   <  1:1902456/71‑1 (MQ=255)

                     gTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGa                                                    >  1:3181305/1‑70 (MQ=255)

                     gTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGa                                                    <  1:2361316/70‑1 (MQ=255)

                     gTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGa                                                    <  1:3370659/70‑1 (MQ=255)

                     gTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGa                                                    >  1:505285/1‑70 (MQ=255)

                     gTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCCCAAGCCGACTGATGCCTTCTGAACAATGGaa                                                   <  1:556244/71‑1 (MQ=255)

                      tCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACT                                                                        <  1:4120275‑M1/49‑1 (MQ=255)

                       cACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTgatgcctttccattgttcagaag                                                 >  1:1459349‑M1/1‑48 (MQ=255)

                       cACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTgatgcctttccattgttcagaag                                                 >  1:2789666‑M1/1‑48 (MQ=255)

                          cTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGa                                                    <  1:960255/65‑1 (MQ=255)

                          cTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCa                                              <  1:4344276/71‑1 (MQ=255)

                           tGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGc                                                                   <  1:3408064/49‑1 (MQ=255)

                           tGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGc                                                                   <  1:4373342/49‑1 (MQ=255)

                            gggACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCat                                             >  1:2380310/1‑70 (MQ=255)

                             ggACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTa                                           <  1:4247522‑M2/71‑2 (MQ=255)

                              gACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTaatgcctttccattgttcagaaggcatcag                                          <  1:1831010‑M1/71‑31 (MQ=255)

                              gACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTaatgcctttccattgttcagaaggcatcag                                          <  1:62898‑M1/71‑31 (MQ=255)

                              gACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCattat                                          <  1:4342716/71‑1 (MQ=255)

                               aCATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGc                                                                   <  1:2581155/45‑1 (MQ=255)

                               aCATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCattatt                                         <  1:2669285/71‑1 (MQ=255)

                               aCATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCattatt                                         <  1:1075300/71‑1 (MQ=255)

                                cATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTg                                        <  1:2982970/71‑1 (MQ=255)

                                cATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTg                                        >  1:3942265/1‑71 (MQ=255)

                                  tGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCatt                                            <  1:2091048/65‑1 (MQ=255)

                                  tGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGcc                                      >  1:4618295/1‑71 (MQ=255)

                                   gTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTaatgcctttccattgttcagaaggc                                               <  1:4402009‑M1/61‑26 (MQ=255)

                                   gTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCg                                     >  1:1317345/1‑71 (MQ=255)

                                   gTTGAAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGaaa                                                  >  1:335868/1‑58 (MQ=255)

                                    ttGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTTAACAATGGAAAGGCATTATTGCCGt                                    <  1:1734501/71‑1 (MQ=255)

                                    ttGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGt                                    <  1:2106449/71‑1 (MQ=255)

                                    ttGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGt                                    <  1:1514917/71‑1 (MQ=255)

                                      gCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGaa                                                   >  1:4188175/1‑54 (MQ=255)

                                       cAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTaa                                  <  1:2002246/70‑1 (MQ=255)

                                       cAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTaa                                  <  1:704982/70‑1 (MQ=255)

                                        aGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGc                                <  1:1431347/71‑1 (MQ=255)

                                          aTCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCt                                                              <  1:275994/39‑1 (MQ=255)

                                          aTCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCat                                             <  1:1197817/56‑1 (MQ=255)

                                          aTCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCg                              >  1:1926269/1‑71 (MQ=255)

                                          aTCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCg                              <  1:4186632/71‑1 (MQ=255)

                                           tCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGt                             <  1:229038/71‑1 (MQ=255)

                                            ccATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTa                                           >  1:3888810‑M2/1‑55 (MQ=255)

                                            ccATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTa                                           <  1:3813345‑M2/56‑2 (MQ=255)

                                            ccATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGGCGTg                            >  1:168866/1‑71 (MQ=255)

                                            ccATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCg                              <  1:3308472/69‑1 (MQ=255)

                                            ccATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCg                              <  1:2694822/69‑1 (MQ=255)

                                            ccATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTg                            >  1:3917273/1‑71 (MQ=255)

                                            ccATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTg                            >  1:977661/1‑71 (MQ=255)

                                              aTGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTa                                           <  1:33683‑M2/54‑2 (MQ=255)

                                              aTGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTa                                           <  1:653620‑M2/54‑2 (MQ=255)

                                              aTGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTa                                           <  1:3948857‑M2/54‑2 (MQ=255)

                                              aTGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGc                                       >  1:3675774/1‑58 (MQ=255)

                                               tGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTgg                           <  1:2015815/69‑1 (MQ=255)

                                                 cACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTTGCGGt                       <  1:1564696/71‑1 (MQ=255)

                                                 cACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCgg                        <  1:1039515/70‑1 (MQ=255)

                                                 cACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCgg                        >  1:3224302/1‑70 (MQ=255)

                                                  aCGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCGGt                       <  1:1675327/70‑1 (MQ=255)

                                                   cGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCGGTCt                     <  1:2606636/71‑1 (MQ=255)

                                                   cGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCGGTCt                     <  1:43201/71‑1 (MQ=255)

                                                    gTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGc                                               <  1:4665967/44‑1 (MQ=255)

                                                      aaaCTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCGGTCTgg                   >  1:1798453/1‑70 (MQ=255)

                                                       aaCTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTgg                           >  1:3333142/1‑61 (MQ=255)

                                                       aaCTCGCAAGCCGACTGATGCCTTATGAACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCGGTCTGGTa                 >  1:2281579/1‑71 (MQ=255)

                                                        aCTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCGGTCTGGTAc                >  1:407712/1‑71 (MQ=255)

                                                         cTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCGGTCTGGTAcc               >  1:3489443/1‑71 (MQ=255)

                                                         cTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCGGTCTGGTAcc               <  1:3557602/71‑1 (MQ=255)

                                                          tCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCat                                             <  1:3075731/40‑1 (MQ=255)

                                                          tCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCat                                             <  1:568987/40‑1 (MQ=255)

                                                           cGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTaa                                  >  1:2990820/1‑50 (MQ=255)

                                                            gCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCGGTCTGGTACCgg             <  1:4471729/70‑1 (MQ=255)

                                                             cAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCGGTCTGGTACCGGGt           <  1:3644589/71‑1 (MQ=255)

                                                                gCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCGGTCTGGTACCGGGTGCg        <  1:3166848/71‑1 (MQ=255)

                                                                  cGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCGGTCTGGTACCGGGTGCGtt      <  1:3458698/71‑1 (MQ=255)

                                                                    aCTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCg                              <  1:2608961/45‑1 (MQ=255)

                                                                    aCTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTgg                           >  1:109692/1‑48 (MQ=255)

                                                                     cTGATGCCTTCTGTACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCGGTCTGGTACCGGGTGCGTTACt   <  1:285363/71‑1 (MQ=255)

                                                                     cTGATGCCTTCTGAACAATGGAAAGGCATTagtcggcttgcgagtttacgtgcatggatctgcaacatgtc   <  1:1831010‑M2/71‑42 (MQ=255)

                                                                      taatgcctttccattgttcagaaggcatcagtcggcttgcgagtttacgtgcatggatctgcaacatgtcc  <  1:4247522‑M1/71‑71 (MQ=255)

                                                                      taatgcctttccattgttcagaaggcatcagtcggcttgcgagtttacgtgcatgg                 >  1:3888810‑M1/1‑1 (MQ=255)

                                                                      taatgcctttccattgttcagaaggcatcagtcggcttgcgagtttacgtgcat                   <  1:653620‑M1/54‑54 (MQ=255)

                                                                      taatgcctttccattgttcagaaggcatcagtcggcttgcgagtttacgtgcat                   <  1:3948857‑M1/54‑54 (MQ=255)

                                                                      taatgcctttccattgttcagaaggcatcagtcggcttgcgagtttacgtgcat                   <  1:659039‑M1/54‑54 (MQ=255)

                                                                      taatgcctttccattgttcagaaggcatcagtcggcttgcgagtttacgtgcat                   <  1:33683‑M1/54‑54 (MQ=255)

                                                                      taatgcctttccattgttcagaaggcatcagtcggcttgcgagtttacgtgcat                   <  1:1055449‑M1/54‑54 (MQ=255)

                                                                      taatgcctttccattgttcagaaggcatcagtcggcttgcgagtttacgtg                      <  1:2564121‑M1/51‑51 (MQ=255)

                                                                      taatgcctttccattgttcagaaggcatcagtcggcttgcgagtttacgtg                      <  1:947206‑M1/51‑51 (MQ=255)

                                                                      taatgcctttccattgttcacaaggcatcagtcggcttgcgagtttacgtgcatgg                 <  1:4134666‑M1/56‑56 (MQ=255)

                                                                      tGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCGGTCTGGTACCGGGTGCGTTACTg  >  1:2963497/1‑71 (MQ=255)

                                                                      tGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCGGTCTGGTACCGGGTGCGTTACTg  >  1:1011568/1‑71 (MQ=255)

CACATGAGCGAAAAATACATCGTCACCTGGGACATGTTGCAGATCCATGCACGTAAACTCGCAAGCCGACTGATGCCTTCTGAACAATGGAAAGGCATTATTGCCGTAAGCCGTGGCGGTCTGGTACCGGGTGCGTTACTG  >  W3110S.gb/255974‑256114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.