| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1209382 | 17 (0.330) | 16 (0.460) | 13/70 | NT | 58.7% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | = 1211179 | 11 (0.320) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
Only 100 of 106 total aligned reads displayed.
AATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGG > W3110S.gb/1209312‑1209451 | ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg > 1:523034‑M1/56‑71 (MQ=255)aaTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG < 1:787194‑M1/71‑1 (MQ=255) cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctct < 1:470434‑M1/71‑5 (MQ=255) gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaa < 1:3135702/71‑1 (MQ=255) gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCa > 1:1490809/1‑70 (MQ=255) tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGttctg > 1:1687892‑M1/1‑65 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa < 1:1241368‑M1/21‑1 (MQ=255) agcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc > 1:503383‑M1/48‑71 (MQ=255) ggCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc < 1:4706995/70‑1 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatt < 1:4100772‑M1/70‑10 (MQ=255) caggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:1369028‑M1/46‑71 (MQ=255) caggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:1567394‑M1/46‑71 (MQ=255) cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAg > 1:2161881/1‑62 (MQ=255) aggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCa > 1:887988‑M1/45‑71 (MQ=255) tatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctg > 1:2638300‑M1/1‑57 (MQ=255) atgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:1896613‑M1/41‑66 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt < 1:2254047‑M1/71‑17 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt < 1:4534975‑M1/71‑17 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctg < 1:2060789‑M1/60‑6 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTc < 1:1429325/65‑1 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc > 1:77367‑M1/38‑71 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgca > 1:1074611‑M1/1‑53 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag > 1:4672020/1‑70 (MQ=255) tgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca > 1:4499285‑M1/37‑71 (MQ=255) ccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa > 1:3886349‑M1/35‑55 (MQ=255) catttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa > 1:3005417‑M1/34‑54 (MQ=255) catttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACg < 1:3921572‑M1/38‑1 (MQ=255) catttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACg < 1:2850027‑M1/38‑1 (MQ=255) ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtc < 1:1812635‑M1/70‑23 (MQ=255) atttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg < 1:3981430‑M1/16‑1 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg > 1:1384327‑M1/32‑47 (MQ=255) ttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa < 1:4261588‑M1/28‑1 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg < 1:2646848‑M1/18‑1 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt < 1:4270249/71‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt < 1:3517477/71‑1 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt > 1:3890160‑M1/25‑70 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt < 1:3506525‑M1/45‑1 (MQ=255) ttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt > 1:3747326‑M1/24‑69 (MQ=255) tgtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGc < 1:1127329‑M1/40‑2 (MQ=255) cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcc > 1:2923406‑M1/1‑35 (MQ=255) cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaa < 1:3201934/40‑1 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcctt < 1:1867141‑M1/71‑39 (MQ=255) ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:1968198‑M1/17‑42 (MQ=255) aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcctt > 1:4460124‑M1/1‑32 (MQ=255) aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtat > 1:4249864/1‑61 (MQ=255) tcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:1325390‑M1/16‑41 (MQ=255) tcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:3155772‑M1/16‑41 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgca > 1:2163740‑M1/1‑31 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcag > 1:3479145‑M1/1‑30 (MQ=255) gCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCgg < 1:2025615/71‑1 (MQ=255) gCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCg < 1:272739/70‑1 (MQ=255) attttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCg > 1:1726092‑M1/14‑70 (MQ=255) attttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCg > 1:3974776‑M1/14‑70 (MQ=255) ctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt > 1:3126629/1‑71 (MQ=255) ctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt > 1:3086300/1‑71 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc < 1:2645095/43‑1 (MQ=255) cataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt > 1:1056262‑M1/9‑69 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactcc > 1:1819066‑M1/1‑23 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactc > 1:4250495‑M1/1‑23 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttc > 1:3001914‑M1/1‑23 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcc < 1:4011516‑M1/46‑24 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt < 1:3908691/68‑1 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt < 1:1587701/71‑1 (MQ=255) ataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAatgcagcca < 1:3585488‑M1/36‑3 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagc < 1:2067039‑M1/64‑43 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt < 1:1997697/51‑1 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 1:3641424/71‑1 (MQ=255) aaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc < 1:4696944/71‑1 (MQ=255) acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa < 1:1857156‑M1/36‑1 (MQ=255) acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa < 1:4493532‑M1/36‑1 (MQ=255) acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa > 1:3466304‑M1/4‑45 (MQ=255) acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc < 1:2438368‑M1/67‑1 (MQ=255) gTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtat > 1:4218167‑M1/2‑71 (MQ=255) ttGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccg > 1:3965940‑M1/1‑16 (MQ=255) ggTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacag < 1:934047‑M1/70‑57 (MQ=255) ggTTTGGGAGAAGGctctgcattacctgttggtgtcccggttcc > 1:1182227‑M1/1‑14 (MQ=255) GGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAcc < 1:1559010‑M1/71‑1 (MQ=255) GGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAcc < 1:648605‑M1/71‑1 (MQ=255) gTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggc < 1:2537340‑M1/71‑59 (MQ=255) tGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctgg > 1:724192‑M1/1‑10 (MQ=255) tGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctgg > 1:687613‑M1/1‑10 (MQ=255) tGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctgg > 1:3014595‑M1/1‑10 (MQ=255) tGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccac > 1:4544563‑M1/1‑10 (MQ=255) tGGGAGAAGGctctgcattacctgttggtgtcccggttc < 1:3411757‑M1/39‑30 (MQ=255) TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt > 1:3538431‑M1/1‑70 (MQ=255) TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt > 1:3243840‑M1/1‑70 (MQ=255) GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc < 1:101828‑M1/60‑1 (MQ=255) gagaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggct > 1:3430052‑M1/1‑7 (MQ=255) agaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctga < 1:632186‑M1/71‑66 (MQ=255) agaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctga < 1:4140217‑M1/71‑66 (MQ=255) AGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGa < 1:157054‑M1/71‑1 (MQ=255) gaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaa < 1:2458153‑M1/71‑67 (MQ=255) GAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt > 1:3325985‑M1/1‑71 (MQ=255) GAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt < 1:782341‑M1/71‑1 (MQ=255) AAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGa < 1:322057‑M1/69‑1 (MQ=255) AAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt > 1:428225‑M1/1‑70 (MQ=255) GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGa < 1:3336890‑M1/67‑1 (MQ=255) GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTgg < 1:3266470‑M1/71‑1 (MQ=255) GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTgg < 1:924733‑M1/71‑1 (MQ=255) GAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg > 1:2363286‑M1/1‑60 (MQ=255) | AATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGG > W3110S.gb/1209312‑1209451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |