| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3453209 = | 77 (1.510) | 5 (0.110) | 4/94 | NT | 5.4% | coding (2228/4029 nt) | rpoB | RNA polymerase, beta subunit |
| ? | W3110S.gb | 3453257 = | 104 (2.220) | coding (2180/4029 nt) | rpoB | RNA polymerase, beta subunit | |||||
Only 100 of 111 total aligned reads displayed.
GTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGACACCACCACG > W3110S.gb/3453139‑3453279 | tggaacgtgctgttgccgttgactccggtgtaactgcggtagctaaacgtggtggtgtcgttcagtacgtg > 1:3384164‑M1/71‑71 (MQ=255)tggaacgtgctgttgccgttgactccggtgtaactgcggtagctaaacgtggtggtgtcgttcagtacgtg > 1:2021175‑M1/71‑71 (MQ=255)gTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCg < 1:2031633/71‑1 (MQ=255) gaacgtgctgttgccgttgactccggtgtaactgcggtagctaaacgtggtggtgtcgttcagtacgtgg > 1:1365497‑M1/69‑70 (MQ=255) gaacgtgctgttgccgttgactccggtgtaactgcggtagctaaacgtggtggtgtcgttcagtacgtGGa < 1:523601‑M1/3‑1 (MQ=255) gATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGa < 1:3254633/70‑1 (MQ=255) gATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGa > 1:1074057/1‑70 (MQ=255) aacgtgctgttgccgttgactccggtgtaactgcggtagctaaacgtggtggtgtcgttcagtacgtGGAt < 1:3742243‑M1/4‑1 (MQ=255) cAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCg < 1:4089338/64‑1 (MQ=255) cAGGTGTTCTGGTTAGAACGGGTGTATTT‑GTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACAtc < 1:1530983/71‑1 (MQ=255) gtgtTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACAtctc > 1:4414774/1‑71 (MQ=255) ttCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGt < 1:892839/70‑1 (MQ=255) cTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCt < 1:1447366/70‑1 (MQ=255) ttAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGtt < 1:3511286/71‑1 (MQ=255) ttAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGtt < 1:3510455/71‑1 (MQ=255) ttAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGt > 1:3515334/1‑70 (MQ=255) aGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTaa > 1:411149/1‑71 (MQ=255) aGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTa < 1:796137/70‑1 (MQ=255) gAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTc < 1:4131145/65‑1 (MQ=255) ccggtgtaactgcggtagctaaacgtggtggtgtcgttcagtacgtGGAt < 1:3839897‑M1/4‑1 (MQ=255) gggTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTg < 1:2811536/71‑1 (MQ=255) gtgtATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGAt < 1:2352070/71‑1 (MQ=255) tATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCg < 1:3393872/40‑1 (MQ=255) tATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCg > 1:400843/1‑57 (MQ=255) tATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAAc > 1:2288043/1‑71 (MQ=255) tATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAAc > 1:1326416/1‑71 (MQ=255) actgcggtagctaaacgtggtggtgtcgttcagtacgtGGATGCTTCTCGTCTTCGTTAACTTTGATAAc > 1:4458776‑M1/39‑70 (MQ=255) tttGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGAt < 1:476290/66‑1 (MQ=255) tttGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGa < 1:1426576/71‑1 (MQ=255) tttGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGa > 1:1500847/1‑71 (MQ=255) ctgcggtagctaaacgtggtggtgtcgttcagtacgtGGATACATCTCGTCTTCGTTAACTTTGATAACg > 1:2810508‑M1/38‑70 (MQ=255) tGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATaa > 1:174067/1‑66 (MQ=255) tGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGAt < 1:2822344/70‑1 (MQ=255) tGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGAt < 1:1576507/70‑1 (MQ=255) tGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGAt < 1:4341079/70‑1 (MQ=255) gcggtagctaaacgtggtggtgtcgttcagtacgtGGATACATCTCGTCTTCGTTAACTTTGATAACGAt < 1:3313634‑M1/35‑1 (MQ=255) gcggtagctaaacgtggtggtgtcgttcagtacgtGGATACATCTCGTCTTCGTTAACTTTGATAACGAt < 1:1217812‑M1/35‑1 (MQ=255) gTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACg < 1:4197085/71‑1 (MQ=255) tCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACgg < 1:1591719/71‑1 (MQ=255) cAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACgg > 1:713720/1‑70 (MQ=255) aGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCtt > 1:2154604/1‑46 (MQ=255) aGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACggg > 1:119267/1‑70 (MQ=255) aGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACggg > 1:3811886/1‑70 (MQ=255) aGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACggg > 1:3156153/1‑70 (MQ=255) ggTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACggg > 1:1892864/1‑69 (MQ=255) ggTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGaa < 1:2388145/71‑1 (MQ=255) gTTGTAGATGTCGATACCTGCTTCACCCGGATACAtctc < 1:3472370/39‑1 (MQ=255) gTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGtt < 1:2785673/48‑1 (MQ=255) gTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTa < 1:3095353/49‑1 (MQ=255) gTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGaa < 1:3069708/70‑1 (MQ=255) gTTGTAGATGTCGATACCTGCTTCACCCCGATACATCTCGTCTTCGTTa < 1:3330694/49‑1 (MQ=255) ctatacgtggtggtgtcgttcagtacgtGGATACATCTCGTCTTCGTTAACTTTGATa > 1:3798883‑M1/29‑58 (MQ=255) tGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCa > 1:3771970/1‑71 (MQ=255) tGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCa > 1:3736563/1‑71 (MQ=255) gTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCa < 1:3429906/70‑1 (MQ=255) gATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCa < 1:4215888/71‑1 (MQ=255) gATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCa > 1:2104180/1‑71 (MQ=255) tGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACg < 1:4640320/71‑1 (MQ=255) gTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAAc > 1:152188/1‑42 (MQ=255) gTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAAc > 1:1324759/1‑42 (MQ=255) gTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCAc > 1:2734242/1‑69 (MQ=255) gTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACg > 1:378701/1‑70 (MQ=255) tCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGt < 1:231952/70‑1 (MQ=255) cGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATa > 1:363259/1‑53 (MQ=255) cGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTAc > 1:3681408/1‑71 (MQ=255) cGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTAc > 1:3236155/1‑71 (MQ=255) cGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTAc > 1:1692529/1‑71 (MQ=255) gATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAg > 1:1097321/1‑59 (MQ=255) gATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACt > 1:3950693/1‑71 (MQ=255) gATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACt > 1:3956092/1‑71 (MQ=255) gATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACt > 1:3354081/1‑71 (MQ=255) aTACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTg < 1:1958136/71‑1 (MQ=255) tACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATcc < 1:2153586/62‑1 (MQ=255) tACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGt < 1:701094/66‑1 (MQ=255) tACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTg > 1:1946414/1‑70 (MQ=255) ccTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAAc < 1:2276955/71‑1 (MQ=255) tGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAAc < 1:1443978/69‑1 (MQ=255) tGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAAc < 1:2145764/69‑1 (MQ=255) gCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGa > 1:2167042/1‑70 (MQ=255) gCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGa > 1:3511277/1‑70 (MQ=255) gCTTCAACCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGa > 1:605261/1‑70 (MQ=255) cTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCa > 1:4515502/1‑57 (MQ=255) cTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGac < 1:79477/70‑1 (MQ=255) cTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGa < 1:462390/69‑1 (MQ=255) cACCCGTATACATATCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGacac < 1:3904307/69‑1 (MQ=255) cACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGacac < 1:2747298/69‑1 (MQ=255) cACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGacac < 1:368862/69‑1 (MQ=255) cccGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGAcaccac < 1:4609270/70‑1 (MQ=255) ccGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAAc < 1:2906560/61‑1 (MQ=255) ccGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGAcaccacca > 1:4590325/1‑71 (MQ=255) ccGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGAcaccacca > 1:3980680/1‑71 (MQ=255) cGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTa < 1:2630026/54‑1 (MQ=255) cGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGAcaccaccac > 1:513193/1‑71 (MQ=255) cGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGAcaccaccac < 1:79070/71‑1 (MQ=255) GGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGacac < 1:2287697‑M1/64‑1 (MQ=255) GGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGACACCACCACg > 1:3258208‑M1/1‑71 (MQ=255) GGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGACACCACCACg > 1:2387089‑M1/1‑71 (MQ=255) GGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGACACCACCACg > 1:2396305‑M1/1‑71 (MQ=255) GGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGACACCACCACg > 1:1573077‑M1/1‑71 (MQ=255) GGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGACACCACCACg > 1:4225123‑M1/1‑71 (MQ=255) | GTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGGATACATCTCGTCTTCGTTAACTTTGATAACGATACGGGAAGCATCCACGTACTGAACGACACCACCACG > W3110S.gb/3453139‑3453279 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |