| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 80 (1.570) | 41/102 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
Only 100 of 153 total aligned reads displayed.
ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC > W3110S.gb/575930‑576068 | atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:3291964‑M2/1‑1 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:3595705‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2263336‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:917214‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2953465‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2475702‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:3519409‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1703178‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:4445967‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2427177‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:121213‑M2/71‑71 (MQ=255) tgatgaacgctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:3504140‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2074846‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2080236‑M2/2‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:3308681‑M2/68‑70 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:97436‑M2/3‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:394895‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:3895398‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:2253672‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:4164575‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:3291872‑M2/4‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:4390149‑M2/4‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttactta > 1:690137‑M2/68‑70 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGt < 1:1784800‑M2/5‑1 (MQ=255) gaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:3629196‑M2/2‑1 (MQ=255) aaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTAc < 1:3952609‑M2/7‑1 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:2153903‑M2/8‑1 (MQ=255) ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1130623‑M2/2‑1 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:3388472‑M2/1‑1 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:2306673‑M2/61‑66 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:3308696‑M2/61‑66 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1719956‑M2/60‑60 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATg > 1:2642787‑M2/60‑71 (MQ=255) gttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:886325‑M2/4‑1 (MQ=255) gttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:1929776‑M2/4‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:4043000‑M2/2‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:4236095‑M2/2‑1 (MQ=255) tctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:3604203‑M2/57‑59 (MQ=255) ctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt > 1:2279193‑M2/56‑57 (MQ=255) ctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1651646‑M2/56‑56 (MQ=255) ctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGa > 1:3510524‑M2/56‑65 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTa > 1:1370880‑M2/53‑70 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAc < 1:2875310‑M2/19‑1 (MQ=255) ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTa > 1:3358525‑M2/52‑69 (MQ=255) gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAca < 1:4302393‑M2/20‑1 (MQ=255) ctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2836149‑M2/2‑1 (MQ=255) ccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:4648161‑M2/48‑51 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:304485‑M2/47‑52 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:1194117‑M2/47‑52 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcagca < 1:2242158‑M2/23‑1 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:3136451‑M2/45‑48 (MQ=255) tgacaaacatgatctcatatcagggacttgttcgcaccttcctt > 1:2003218‑M2/43‑44 (MQ=255) tgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcagca < 1:3031448‑M2/23‑1 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:1822496‑M2/25‑1 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTg > 1:3786880‑M2/42‑71 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGcc < 1:2546216‑M2/32‑1 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc > 1:4301552‑M2/40‑70 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc > 1:3615265‑M2/40‑70 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc > 1:3405005‑M2/40‑70 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttcctt < 1:3524186‑M2/2‑1 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttcct < 1:2521668‑M2/1‑1 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:673472‑M2/4‑1 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCAc < 1:69101‑M2/34‑1 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCAc < 1:3949012‑M2/34‑1 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTa > 1:664225‑M2/37‑39 (MQ=255) atgatctcatatcagggacttgttcgcaccttccTTAGTACTGATTCAGCTACAGCAGAAATTGCCa < 1:3994851‑M2/33‑1 (MQ=255) tctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAt > 1:3397897‑M2/31‑71 (MQ=255) tctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCAATGTTAAt > 1:526786‑M2/31‑71 (MQ=255) tcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAttt > 1:3730686‑M2/29‑71 (MQ=255) tcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAttt > 1:2405386‑M2/29‑71 (MQ=255) catatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAca > 1:4576824‑M2/28‑47 (MQ=255) catatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttt > 1:2722842‑M2/28‑71 (MQ=255) atatcagtgacttgttcgcagcttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtt < 1:2342611‑M2/42‑1 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:4032556‑M2/31‑1 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTaa > 1:861961‑M2/27‑66 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAttttt < 1:973051‑M2/45‑1 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtt < 1:3124643‑M2/42‑1 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTc < 1:3182282‑M2/47‑1 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTc < 1:3226430‑M2/47‑1 (MQ=255) agggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATc < 1:4076857‑M2/50‑1 (MQ=255) agggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATc < 1:4411766‑M2/50‑1 (MQ=255) gggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAt > 1:1516866‑M2/21‑48 (MQ=255) gggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCg < 1:980992‑M2/51‑1 (MQ=255) ggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGt < 1:4072157‑M2/52‑1 (MQ=255) ggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGt < 1:1953319‑M2/52‑1 (MQ=255) gacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTg < 1:540849‑M2/53‑1 (MQ=255) gacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTg < 1:2277252‑M2/53‑1 (MQ=255) ttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGtt < 1:1474907‑M2/38‑1 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGt > 1:2545187‑M2/14‑65 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGcc > 1:2999222‑M2/14‑70 (MQ=255) caccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttt < 1:935140‑M2/44‑1 (MQ=255) caccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCttttt < 1:3669586‑M2/63‑1 (MQ=255) ccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:2743444‑M2/31‑1 (MQ=255) ccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:4350058‑M2/31‑1 (MQ=255) ccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:3350028‑M2/31‑1 (MQ=255) ccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGt < 1:4617220‑M2/52‑1 (MQ=255) cttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:1081880‑M2/31‑1 (MQ=255) ttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttt < 1:1518029‑M2/44‑1 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCttttt < 1:1904244‑M2/63‑1 (MQ=255) cTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAc < 1:3849177‑M2/69‑1 (MQ=255) | ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC > W3110S.gb/575930‑576068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |